Evidence map›Paper›PMID 28221360›Full record

ArticleNature chemistry2017

Why copper is preferred over iron for oxygen activation and reduction in haem-copper oxidases.

Ambika Bhagi-Damodaran, Matthew A Michael, Qianhong Zhu, Julian Reed, Braddock A Sandoval, Evan N Mirts, Saumen Chakraborty, Pierre Moënne-Loccoz, Yong Zhang, Yi Lu

Abstract read
In one paragraph

Article in Nature chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 152 citations in OpenAlex.

  1. Cuproptosis and the bioinorganic basis of copper-induced cell death.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2026
    Review
  2. Immunoblot-based activity assay for heme-containing histidine kinases.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. One-Electron NO to NChemistry (Weinheim an der Bergstrasse, Germany) · 2024
    Article
  10. Review
  11. Review
  12. Article
  13. Engineering an Oxygen-Binding Protein for Photocatalytic COAngewandte Chemie (International ed. in English) · 2023
    Article
  14. Article
  15. OMolecules (Basel, Switzerland) · 2022
    Article
  16. Review
  17. Thioester synthesis by a designed nickel enzyme models prebiotic energy conversion.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Ambika Bhagi-DamodaranDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Matthew A MichaelDepartment of Biomedical Engineering, Chemistry, and Biological Sciences, Stevens Institute of Technology, Hoboken, New Jersey, USA.
Qianhong ZhuDivision of Environmental &Biomolecular Systems, Institute of Environmental Health, Oregon Health &Science University, 3181 SW Sam Jackson Park Road, Portland, Oregon, USA.
Julian ReedDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Braddock A SandovalDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Evan N MirtsCenter for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Saumen ChakrabortyDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Pierre Moënne-LoccozDivision of Environmental &Biomolecular Systems, Institute of Environmental Health, Oregon Health &Science University, 3181 SW Sam Jackson Park Road, Portland, Oregon, USA.
Yong ZhangDepartment of Biomedical Engineering, Chemistry, and Biological Sciences, Stevens Institute of Technology, Hoboken, New Jersey, USA.ORCID 0000-0001-7207-6416
Yi LuDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
University of Illinois Urbana-Champaign · USOregon Health & Science University · USStevens Institute of Technology · US

Funding

DESIGNING HETERONUCLEAR METALLOENZYMESR01GM062211 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI LU, YI · 2001 to 2021
$5.1M
Nitric Oxide Reactions in MetalloenzymesR01GM074785 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI MOENNE-LOCCOZ, PIERRE · 2006 to 2019
$3.8M
NIGMS NIH HHS R01 GM062211NIGMS NIH HHS R01 GM074785
6 · The paper itself

Abstract

Haem-copper oxidase (HCO) catalyses the natural reduction of oxygen to water using a haem-copper centre. Despite decades of research on HCOs, the role of non-haem metal and the reason for nature's choice of copper over other metals such as iron remains unclear. Here, we use a biosynthetic model of HCO in myoglobin that selectively binds different non-haem metals to demonstrate 30-fold and 11-fold enhancements in the oxidase activity of Cu- and Fe-bound HCO mimics, respectively, as compared with Zn-bound mimics. Detailed electrochemical, kinetic and vibrational spectroscopic studies, in tandem with theoretical density functional theory calculations, demonstrate that the non-haem metal not only donates electrons to oxygen but also activates it for efficient O-O bond cleavage. Furthermore, the higher redox potential of copper and the enhanced weakening of the O-O bond from the higher electron density in the d orbital of copper are central to its higher oxidase activity over iron. This work resolves a long-standing question in bioenergetics, and renders a chemical-biological basis for the design of future oxygen-reduction catalysts.

Indexed as

BiocatalysisCopperElectrochemical TechniquesIronKineticsModels, TheoreticalOxidation-ReductionOxidoreductasesOxygenSpectrophotometry, InfraredZincCoppercopper oxidaseIronOxidoreductasesOxygenZinc

Identifiers

PMID28221360
PMCPMC5321616
OpenAlexW2554142923

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.