Evidence map›Paper›PMID 28220889›Full record

ArticleScientific reports2017

A recovery principle provides insight into auxin pattern control in the Arabidopsis root.

Simon Moore, Junli Liu, Xiaoxian Zhang, Keith Lindsey

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Modeling Auxin Signaling in Roots: Auxin Computations.Cold Spring Harbor perspectives in biology · 2022
    Review
  4. Article
  5. Review
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Simon MooreDepartment of Biosciences, Durham University, South Road, Durham DH1 3LE, UK.
Junli LiuDepartment of Biosciences, Durham University, South Road, Durham DH1 3LE, UK.
Xiaoxian ZhangDepartment of Sustainable Soil and Grassland System, Rothamsted Research, Harpenden, Hertfordshire AL5 2GQ, UK.
Keith LindseyDepartment of Biosciences, Durham University, South Road, Durham DH1 3LE, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/E006531/1
6 · The paper itself

Abstract

Regulated auxin patterning provides a key mechanism for controlling root growth and development. We have developed a data-driven mechanistic model using realistic root geometry and formulated a principle to theoretically investigate quantitative auxin pattern recovery following auxin transport perturbation. This principle reveals that auxin patterning is potentially controlled by multiple combinations of interlinked levels and localisation of influx and efflux carriers. We demonstrate that (1) when efflux carriers maintain polarity but change levels, maintaining the same auxin pattern requires non-uniform and polar distribution of influx carriers; (2) the emergence of the same auxin pattern, from different levels of influx carriers with the same nonpolar localisation, requires simultaneous modulation of efflux carrier level and polarity; and (3) multiple patterns of influx and efflux carriers for maintaining an auxin pattern do not have spatially proportional correlation. This reveals that auxin pattern formation requires coordination between influx and efflux carriers. We further show that the model makes various predictions that can be experimentally validated.

Indexed as

ArabidopsisArabidopsis ProteinsCell WallIndoleacetic AcidsModels, BiologicalPlant Growth RegulatorsPlant RootsArabidopsis ProteinsIndoleacetic AcidsPlant Growth Regulators

Identifiers

PMID28220889
PMCPMC5318957

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.