Evidence map›Paper›PMID 28220806›Full record

ArticleScientific reports2017

On the Long-term Stability of Clines in Some Metabolic Genes in Drosophila melanogaster.

Rodrigo Cogni, Kate Kuczynski, Spencer Koury, Erik Lavington, Emily L Behrman, Katherine R O'Brien, Paul S Schmidt, Walter F Eanes

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Fitness effects but no temperature-mediated balancing selection at the polymorphicProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rodrigo CogniDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, New York, 11794 USA.
Kate KuczynskiDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, New York, 11794 USA.
Spencer KouryDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, New York, 11794 USA.
Erik LavingtonDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, New York, 11794 USA.
Emily L BehrmanDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA.
Katherine R O'BrienDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA.
Paul S SchmidtDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA.
Walter F EanesDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, New York, 11794 USA.

Funding

Genomics of rapid adaptation on seasonal timescales in D. melanogasterR01GM100366 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SCHMIDT, PAUL · 2012 to 2019
$3.3M
Metabolic and dopamine pathways in energy sensing and adaptation in DrosophilaR01GM090094 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI EANES, WALTER F., TRUE, JOHN R · 2010 to 2013
$1.2M
NIGMS NIH HHS R01 GM090094NIGMS NIH HHS R01 GM100366
6 · The paper itself

Abstract

Very little information exists for long-term changes in genetic variation in natural populations. Here we take the unique opportunity to compare a set of data for SNPs in 15 metabolic genes from eastern US collections of Drosophila melanogaster that span a large latitudinal range and represent two collections separated by 12 to 13 years. We also expand this to a 22-year interval for the Adh gene and approximately 30 years for the G6pd and Pgd genes. During these intervals, five genes showed a statistically significant change in average SNP allele frequency corrected for latitude. While much remains unchanged, we see five genes where latitudinal clines have been lost or gained and two where the slope significantly changes. The long-term frequency shift towards a southern favored Adh S allele reported in Australia populations is not observed in the eastern US over a period of 21 years. There is no general pattern of southern-favored or northern-favored alleles increasing in frequency across the genes. This observation points to the fluid nature of some allelic variation over this time period and the action of selective responses or migration that may be more regional than uniformly imposed across the cline.

Indexed as

Gene FrequencyAnimalsDrosophila melanogasterDrosophila ProteinsPolymorphism, Single NucleotideSelection, GeneticDrosophila Proteins

Identifiers

PMID28220806
PMCPMC5318857

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.