ReviewTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2017
A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array.
Review in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed.
- Review
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- Harnessing genomic prediction in Brassica napus through a nested association mapping population.The plant genome · 2025Article
- Genetic dissection of plant architecture reveals haplotypes controlling sink-related traits in oilseed rape under limited nitrogen fertilization.BMC plant biology · 2025Article
- Breeding and biotechnology approaches to enhance the nutritional quality of rapeseed byproducts for sustainable alternative protein sources- a critical review.Frontiers in plant science · 2024Review
- Article
- Genome composition in Brassica interspecific hybrids affects chromosome inheritance and viability of progeny.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023Article
- Genetic factors inherited from both diploid parents interact to affect genome stability and fertility in resynthesized allotetraploid Brassica napus.G3 (Bethesda, Md.) · 2023Article
- Wheat doubled haploids have a marked prevalence of chromosomal aberrations.The plant genome · 2023Article
- Haplotype blocks for genomic prediction: a comparative evaluation in multiple crop datasets.Frontiers in plant science · 2023Article
- Brassica napus Bacterial Assembly Processes Vary with Plant Compartment and Growth Stage but Not between Lines.Applied and environmental microbiology · 2022Article
- Article
- Frequent spontaneous structural rearrangements promote rapid genome diversification in aFrontiers in plant science · 2022Article
- Plant Genotype to Phenotype Prediction Using Machine Learning.Frontiers in genetics · 2022Review
- Breeding Canola (Plants (Basel, Switzerland) · 2021Review
- Development of B. carinata with super-high erucic acid content through interspecific hybridization.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- QTL Mapping and Diurnal Transcriptome Analysis Identify Candidate Genes RegulatingInternational journal of molecular sciences · 2021Article
- Candidate Rlm6 resistance genes against Leptosphaeria. maculans identified through a genome-wide association study in Brassica juncea (L.) Czern.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Genetic Analysis of Heterosis for Yield Influencing Traits inFrontiers in plant science · 2021Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Brassica napus 60K Illumina Infinium™ SNP array has had huge international uptake in the rapeseed community due to the revolutionary speed of acquisition and ease of analysis of this high-throughput genotyping data, particularly when coupled with the newly available reference genome sequence. However, further utilization of this valuable resource can be optimized by better understanding the promises and pitfalls of SNP arrays. We outline how best to analyze Brassica SNP marker array data for diverse applications, including linkage and association mapping, genetic diversity and genomic introgression studies. We present data on which SNPs are locus-specific in winter, semi-winter and spring B. napus germplasm pools, rather than amplifying both an A-genome and a C-genome locus or multiple loci. Common issues that arise when analyzing array data will be discussed, particularly those unique to SNP markers and how to deal with these for practical applications in Brassica breeding applications.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.