Evidence map›Paper›PMID 28219390›Full record

ArticleGenome biology2017

The genome landscape of indigenous African cattle.

Jaemin Kim, Olivier Hanotte, Okeyo Ally Mwai, Tadelle Dessie, Salim Bashir, Boubacar Diallo, Morris Agaba, Kwondo Kim, Woori Kwak, Samsun Sung and 13 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
23.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 289 citations in OpenAlex.

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  13. Genetic Relationships Among Resilience, Fertility and Milk Production Traits in Crossbred Dairy Cows Performing in Sub-Saharan Africa.Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie · 2025
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81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 12 institutions in 10 countries.

Jaemin KimC&K genomics, Seoul National University Research Park, Seoul, 151-919, Republic of Korea.
Olivier HanotteThe University of Nottingham, School of Life Sciences, Nottingham, NG7 2RD, UK.
Okeyo Ally MwaiInternational Livestock Research Institute (ILRI), Box 30709 -00100, Nairobi, Kenya.
Tadelle DessieInternational Livestock Research institute (ILRI), P. O. Box 5689, Addis Ababa, Ethiopia.
Salim BashirDepartment of Parasitology, Faculty of Veterinary Medicine, University of Khartoum, 13314, Khartoum North, Sudan.
Boubacar DialloNational Coordinateur RGA, Ministère Elevage - Productions Animales, B.P. 559, Conakry, Guinea.
Morris AgabaNelson Mandela African Institution of Science and Technology, Nelson Mandela Road. P. O. Box 447, Arusha, Tanzania.
Kwondo KimC&K genomics, Seoul National University Research Park, Seoul, 151-919, Republic of Korea.
Woori KwakC&K genomics, Seoul National University Research Park, Seoul, 151-919, Republic of Korea.
Samsun SungC&K genomics, Seoul National University Research Park, Seoul, 151-919, Republic of Korea.
Minseok SeoC&K genomics, Seoul National University Research Park, Seoul, 151-919, Republic of Korea.
Hyeonsoo JeongDepartment of Animal Sciences, University of Illinois, Urbana, IL, 61801, USA.
Taehyung KwonDepartment of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 151-742, Republic of Korea.
Mengistie TayeDepartment of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 151-742, Republic of Korea.
Ki-Duk SongThe Animal Molecular Genetics and Breeding Center, Chonbuk National University, Jeonju, 54896, Republic of Korea.
Dajeong LimDivision of Animal Genomics & Bioinformatics, National Institute of Animal Science, RDA, Jeonju, 565-851, Republic of Korea.
Seoae ChoC&K genomics, Seoul National University Research Park, Seoul, 151-919, Republic of Korea.
Hyun-Jeong LeeInterdisciplinary Program in Bioinformatics, Seoul National University, Seoul, 151-741, Republic of Korea.
Duhak YoonDepartment of Animal Science, Kyungpook National University, Sangju, 742-711, Republic of Korea.
Sung Jong OhNational Institute of Animal Science, RDA, Jeonju, 565-851, Republic of Korea.
Stephen KempInternational Livestock Research Institute (ILRI), Box 30709 -00100, Nairobi, Kenya.
Hak-Kyo LeeThe Animal Molecular Genetics and Breeding Center, Chonbuk National University, Jeonju, 54896, Republic of Korea. breedlee@empal.com.
Heebal KimC&K genomics, Seoul National University Research Park, Seoul, 151-919, Republic of Korea. heebal@snu.ac.kr.ORCID 0000-0003-3064-1303
Seoul National University · KRNational Institute of Animal Science · KRInternational Livestock Research Institute · KEJeonbuk National University · KRKyungpook National University · KRMinistère de l'Agriculture · CINelson Mandela African Institution of Science and Technology · TZRoslin Institute · GBShinshu University · JPUniversity of Illinois Urbana-Champaign · USUniversity of Khartoum · SDUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe history of African indigenous cattle and their adaptation to environmental and human selection pressure is at the root of their remarkable diversity. Characterization of this diversity is an essential step towards understanding the genomic basis of productivity and adaptation to survival under African farming systems.

resultsWe analyze patterns of African cattle genetic variation by sequencing 48 genomes from five indigenous populations and comparing them to the genomes of 53 commercial taurine breeds. We find the highest genetic diversity among African zebu and sanga cattle. Our search for genomic regions under selection reveals signatures of selection for environmental adaptive traits. In particular, we identify signatures of selection including genes and/or pathways controlling anemia and feeding behavior in the trypanotolerant N'Dama, coat color and horn development in Ankole, and heat tolerance and tick resistance across African cattle especially in zebu breeds.

conclusionsOur findings unravel at the genome-wide level, the unique adaptive diversity of African cattle while emphasizing the opportunities for sustainable improvement of livestock productivity on the continent.

Indexed as

Genetic VariationGenomeGenomicsAdaptation, BiologicalAnimalsCattleEnvironmentEvolution, MolecularGene-Environment InteractionGenetics, PopulationGeographyHumansPolymorphism, Single NucleotidePopulation DynamicsStress, PhysiologicalAdaptationAfrican cattleDiversityGenome

Identifiers

PMID28219390
PMCPMC5319050
OpenAlexW2589273673

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.