Evidence map›Paper›PMID 28218913›Full record

ArticleNature chemical biology2017

Ligand-promoted protein folding by biased kinetic partitioning.

Karan S Hingorani, Matthew C Metcalf, Derrick T Deming, Scott C Garman, Evan T Powers, Lila M Gierasch

Abstract read
In one paragraph

Article in Nature chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Karan S HingoraniProgram in Molecular and Cellular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, USA.
Matthew C MetcalfProgram in Molecular and Cellular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, USA.
Derrick T DemingProgram in Molecular and Cellular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, USA.
Scott C GarmanProgram in Molecular and Cellular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, USA.
Evan T PowersDepartment of Chemistry, The Scripps Research Institute, La Jolla, California, USA.
Lila M GieraschProgram in Molecular and Cellular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, USA.

Funding

Protein folding in the cell: Challenges and coping mechanisms Administrative Supplement for Equipment PurchaseR35GM118161 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI GIERASCH, LILA M · 2016 to 2025
$5.5M
CHEMISTRY-BIOLOGY INTERFACE PREDOCTORAL TRAINING GRANTST32GM008515 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI THOMPSON, LYNMARIE K. · 1995 to 2020
$4.3M
Structural Studies of Lysosomal Storage DiseasesR01DK076877 · NIDDK · UNIVERSITY OF MASSACHUSETTS AMHERST · PI GARMAN, SCOTT C. · 2007 to 2021
$4.3M
Modeling a cellular protein homeostasis networkR01GM101644 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI GIERASCH, LILA M, POWERS, EVAN THOMAS · 2013 to 2016
$1.6M
NIDDK NIH HHS R01 DK076877NIGMS NIH HHS R01 GM101644NIGMS NIH HHS R35 GM118161NIGMS NIH HHS T32 GM008515
6 · The paper itself

Abstract

Protein folding in cells occurs in the presence of high concentrations of endogenous binding partners, and exogenous binding partners have been exploited as pharmacological chaperones. A combined mathematical modeling and experimental approach shows that a ligand improves the folding of a destabilized protein by biasing the kinetic partitioning between folding and alternative fates (aggregation or degradation). Computationally predicted inhibition of test protein aggregation and degradation as a function of ligand concentration are validated by experiments in two disparate cellular systems.

Indexed as

Ligands1-Deoxynojirimycinalpha-GalactosidaseEscherichia coliHEK293 CellsHumansKineticsModels, MolecularMolecular ChaperonesProtein AggregatesProtein FoldingProteolysisReproducibility of ResultsTetrahydrofolate DehydrogenaseTrimethoprim1-Deoxynojirimycinalpha-GalactosidaseGLA protein, humanLigandsmigalastatMolecular ChaperonesProtein AggregatesTetrahydrofolate DehydrogenaseTrimethoprim

Identifiers

PMID28218913
PMCPMC5362304

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.