Evidence map›Paper›PMID 28218293›Full record

ArticleScientific reports2017

Plasma Exosome Profiling of Cancer Patients by a Next Generation Systems Biology Approach.

Valeriy Domenyuk, Zhenyu Zhong, Adam Stark, Nianqing Xiao, Heather A O'Neill, Xixi Wei, Jie Wang, Teresa T Tinder, Sonal Tonapi, Janet Duncan and 11 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Effect of exosome biomarkers for diagnosis and prognosis of breast cancer patients.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2018
    Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Therapeutically harnessing extracellular vesicles.Nature reviews. Drug discovery · 2022
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 2 countries.

Valeriy DomenyukCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Zhenyu ZhongCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Adam StarkCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Nianqing XiaoCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Heather A O'NeillCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Xixi WeiCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Jie WangCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Teresa T TinderCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Sonal TonapiCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Janet DuncanCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Tassilo HornungCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Andrew HunterCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Mark R MiglareseCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Joachim SchorrCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
David D HalbertCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
John QuackenbushDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, 450 Brookline Avenue, Smith 822A, Boston, MA 02215, USA.
George PosteComplex Adaptive Systems Initiative, Arizona State University, 1475 N. Scottsdale Rd., Suite 361, Scottsdale, AZ 85257, USA.
Donald A BerryDepartment of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Günter MayerCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Michael FamulokCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
David SpetzlerCaris Life Sciences, 4610 South 44th Place, Phoenix, AZ 85040, USA.
Caris Life Sciences (United States) · USArizona State University · USDana-Farber Cancer Institute · USThe University of Texas MD Anderson Cancer Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Center for Clinical and Translational Sciences (CCTS)UL1TR000371 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2012 to 2016
$13.4M
Statistical Methods for Analysis of Massive Genetic and Genomic Data in Cancer ResearchR35CA197449 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI XIHONG LIN · 2015 to 2026
$10.9M
Quantitative Radiomics System Decoding the Tumor PhenotypeU24CA194354 · NCI · DANA-FARBER CANCER INST · PI AERTS, HUGO, QUACKENBUSH, JOHN · 2015 to 2019
$3.5M
Genotype and Imaging Phenotype Biomarkers in Lung CancerU01CA190234 · NCI · DANA-FARBER CANCER INST · PI AERTS, HUGO, QUACKENBUSH, JOHN · 2015 to 2019
$3.3M
MeV: Software for Next Generation Genomic Data AnalysisU01CA151118 · NCI · DANA-FARBER CANCER INST · PI QUACKENBUSH, JOHN · 2011 to 2015
$2.9M
6 · The paper itself

Abstract

Technologies capable of characterizing the full breadth of cellular systems need to be able to measure millions of proteins, isoforms, and complexes simultaneously. We describe an approach that fulfils this criterion: Adaptive Dynamic Artificial Poly-ligand Targeting (ADAPT). ADAPT employs an enriched library of single-stranded oligodeoxynucleotides (ssODNs) to profile complex biological samples, thus achieving an unprecedented coverage of system-wide, native biomolecules. We used ADAPT as a highly specific profiling tool that distinguishes women with or without breast cancer based on circulating exosomes in their blood. To develop ADAPT, we enriched a library of ~10

Indexed as

Area Under CurveBiomarkers, TumorBreast NeoplasmsExosomesFemaleHigh-Throughput Nucleotide SequencingHumansOligodeoxyribonucleotidesSELEX Aptamer TechniqueSequence Analysis, DNASystems BiologyBiomarkers, TumorOligodeoxyribonucleotides

Identifiers

PMID28218293
PMCPMC5316983
OpenAlexW2589908515

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.