Evidence map›Paper›PMID 28217124›Full record

ArticleFrontiers in microbiology2017

Sulfur-Oxidizing Bacteria Mediate Microbial Community Succession and Element Cycling in Launched Marine Sediment.

Hideyuki Ihara, Tomoyuki Hori, Tomo Aoyagi, Mitsuru Takasaki, Yoko Katayama

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 38 citations in OpenAlex.

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  6. Draft Genome Sequences ofMicrobiology resource announcements · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Hideyuki IharaUnited Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology Fuchu, Japan.
Tomoyuki HoriEnvironmental Management Research Institute, National Institute of Advanced Industrial Science and Technology Tsukuba, Japan.
Tomo AoyagiEnvironmental Management Research Institute, National Institute of Advanced Industrial Science and Technology Tsukuba, Japan.
Mitsuru TakasakiDepartment of Food and Environmental Sciences, Faculty of Science and Engineering, Ishinomaki Senshu University Ishinomaki, Japan.
Yoko KatayamaInstitute of Agriculture, Tokyo University of Agriculture and Technology Fuchu, Japan.
National Institute of Advanced Industrial Science and Technology · JPTokyo University of Agriculture and Technology · JPIshinomaki Senshu University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A large amount of marine sediment was launched on land by the Great East Japan earthquake. Here, we employed both on-site and laboratory studies on the launched marine sediment to investigate the succession of microbial communities and its effects on geochemical properties of the sediment. Twenty-two-month on-site survey showed that microbial communities at the uppermost layer (0-2 mm depth) of the sediment changed significantly with time, whereas those at the deeper layer (20-40 mm depth) remained nearly unchanged and kept anaerobic microbial communities. Nine months after the incidence, various sulfur-oxidizing bacteria (SOB) prevailed in the uppermost layer, in which afterwards diverse chemoorganotrophic bacteria predominated. Geochemical analyses indicated that the concentration of metals other than Fe was lower in the uppermost layer than that in the deeper layer. Laboratory study was carried out by incubating the sediment for 57 days, and clearly indicated the dynamic transition of microbial communities in the uppermost layer exposed to atmosphere. SOB affiliated in the class Epsilonproteobacteria rapidly proliferated and dominated at the uppermost layer during the first 3 days, after that Fe(II)-oxidizing bacteria and chemoorganotrophic bacteria were sequentially dominant. Furthermore, the concentration of sulfate ion increased and the pH decreased. Consequently, SOB may have influenced the mobilization of heavy metals in the sediment by metal-bound sulfide oxidation and/or sediment acidification. These results demonstrate that SOB initiated the dynamic shift from the anaerobic to aerobic microbial communities, thereby playing a critical role in element cycling in the marine sediment.

Indexed as

Epsilonproteobacteriahigh-throughput sequencinglaunched marine sedimentmicrobial communitysulfur-oxidizing bacteria

Identifiers

PMID28217124
PMCPMC5289976
OpenAlexW2584021695

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.