Evidence map›Paper›PMID 28216146›Full record

ArticleStem cell reports2017

Divergent Levels of Marker Chromosomes in an hiPSC-Based Model of Psychosis.

Julia Tcw, Claudia M B Carvalho, Bo Yuan, Shen Gu, Alyssa N Altheimer, Shane McCarthy, Dheeraj Malhotra, Jonathan Sebat, Arthur J Siegel, Uwe Rudolph and 3 more

Abstract read
In one paragraph

Article in Stem cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Upregulated GIRK2 Counteracts Ethanol-Induced Changes in Excitability and Respiration in Human Neurons.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  4. Review
  5. Review
  6. Genetics of Alcohol Use Disorder: A Role for Induced Pluripotent Stem Cells?Alcoholism, clinical and experimental research · 2018
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Julia TcwDepartments of Neuroscience, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA; Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA.
Claudia M B CarvalhoDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA. Electronic address: cfonseca@bcm.edu.
Bo YuanDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Shen GuDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Alyssa N AltheimerDepartments of Neuroscience, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA; Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA.
Shane McCarthyCold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Dheeraj MalhotraF. Hoffmann-La Roche Ltd, 4070 Basel, Switzerland.
Jonathan SebatDepartments of Psychiatry, Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Arthur J SiegelDepartment of Internal Medicine, McLean Hospital, Belmont, MA 02478, USA; Department of Medicine, Harvard Medical School, Boston, MA 02115, USA.
Uwe RudolphLaboratory of Genetic Neuropharmacology, McLean Hospital, Belmont, MA 02478, USA; Department of Psychiatry, Harvard Medical School, Boston, MA 02115, USA.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.
Deborah L LevyDepartment of Psychiatry, Harvard Medical School, Boston, MA 02115, USA; Psychology Research Laboratory, McLean Hospital, Belmont, MA 02478, USA. Electronic address: dlevy@mclean.harvard.edu.
Kristen J BrennandDepartments of Neuroscience, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA; Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA. Electronic address: kristen.brennand@mssm.edu.

Funding

Nonrecurrent rearrangements, genome architecture and neurodegenerative disease.R01NS058529 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2009 to 2017
$5.0M
Contrasting causal microRNAs in forebrain and midbrain COS hiPSC neural cellsR01MH101454 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BRENNAND, KRISTEN JENNIFER · 2013 to 2017
$2.8M
Neurobiology of a Mutation in Glycine Metabolism in Psychotic DisordersR21MH097470 · NIMH · MCLEAN HOSPITAL · PI LEVY, DEBORAH L · 2012 to 2014
$525k
Neurobiological relevance of 9p24.1 CNVs for bipolar disorder and schizophreniaR21MH104505 · NIMH · MCLEAN HOSPITAL · PI RUDOLPH, UWE · 2014 to 2015
$435k
Targeting a Genetic Mutation in Glycine Metabolism with D-CycloserineR21MH105732 · NIMH · MCLEAN HOSPITAL · PI LEVY, DEBORAH L · 2014 to 2015
$428k
NIMH NIH HHS R01 MH101454NIMH NIH HHS R21 MH097470NIMH NIH HHS R21 MH104505NIMH NIH HHS R21 MH105732NINDS NIH HHS R01 NS058529
6 · The paper itself

Abstract

In the process of generating presumably clonal human induced pluripotent stem cells (hiPSCs) from two carriers of a complex structural rearrangement, each having a psychotic disorder, we also serendipitously generated isogenic non-carrier control hiPSCs, finding that the rearrangement occurs as an extrachromosomal marker (mar) element. All confirmed carrier hiPSCs and differentiated neural progenitor cell lines were found to be mosaic. We caution that mar elements may be difficult to functionally evaluate in hiPSC cultures using currently available methods, as it is difficult to distinguish cells with and without mar elements in live mosaic cultures.

Indexed as

Chromosomes, HumanGenetic MarkersChromosome DuplicationChromosomes, Human, Pair 9Comparative Genomic HybridizationGenetic Association StudiesGenetic Predisposition to DiseaseHeterozygoteHumansInduced Pluripotent Stem CellsMatrix Attachment RegionsMosaicismPsychotic DisordersTrisomyGenetic Markers9p24.1bipolar disorderhuman induced pluripotent stem cellisogenicmarker chromosomemosaicneural progenitor cellschizophrenia

Identifiers

PMID28216146
PMCPMC5355568

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.