Evidence map›Paper›PMID 28215400›Full record

ArticleAmerican journal of human genetics2017

Somatic Mutations in TSC1 and TSC2 Cause Focal Cortical Dysplasia.

Jae Seok Lim, Ramu Gopalappa, Se Hoon Kim, Suresh Ramakrishna, Minji Lee, Woo-Il Kim, Junho Kim, Sang Min Park, Junehawk Lee, Jung-Hwa Oh and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 2 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 2 syntheses or guidelines pooled it, 206 citations in OpenAlex.

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  18. ILAE genetic literacy series: Focal cortical dysplasia.Epileptic disorders : international epilepsy journal with videotape · 2025
    Review
  19. Article
  20. Focal postnatal deletion ofFrontiers in molecular neuroscience · 2025
    Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

Jae Seok LimBrain Korea 21 Plus Project, Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science & Technology, Daejeon 34141, South Korea.
Ramu GopalappaGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, South Korea; Brain Korea 21 Plus Project for Medical Sciences, Graduate Program of Nano Science and Technology, Department of Pharmacology, Yonsei University College of Medicine, Seoul 03722, South Korea.
Se Hoon KimDepartment of Pathology, Yonsei University College of Medicine, Seoul 03722, South Korea.
Suresh RamakrishnaGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, South Korea.
Minji LeeDepartment of Integrated OMICS for Biomedical Science, Yonsei University, Seoul 03722, South Korea.
Woo-Il KimBrain Korea 21 Plus Project, Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science & Technology, Daejeon 34141, South Korea.
Junho KimSeverance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 03722, South Korea.
Sang Min ParkBrain Korea 21 Plus Project, Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science & Technology, Daejeon 34141, South Korea.
Junehawk LeeBiomedical HPC Technology Research Center, Korea Institute of Science and Technology Information, Daejeon 34141, South Korea.
Jung-Hwa OhDepartment of Predictive Toxicology, Korea Institute of Toxicology, Daejeon 34114, South Korea.
Heung Dong KimDivision of Pediatric Neurology, Department of Pediatrics, Pediatric Epilepsy Clinics, Severance Children's Hospital, Epilepsy Research Institute, Yonsei University College of Medicine, Seoul 03722, South Korea.
Chang-Hwan ParkGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, South Korea.
Joon Soo LeeDivision of Pediatric Neurology, Department of Pediatrics, Pediatric Epilepsy Clinics, Severance Children's Hospital, Epilepsy Research Institute, Yonsei University College of Medicine, Seoul 03722, South Korea.
Sangwoo KimSeverance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 03722, South Korea.
Dong Seok KimPediatric Neurosurgery, Severance Children's Hospital, Department of Neurosurgery, Yonsei University College of Medicine, Seoul 03722, South Korea.
Jung Min HanDepartment of Integrated OMICS for Biomedical Science, Yonsei University, Seoul 03722, South Korea; College of Pharmacy, Yonsei University, Seoul 03722, South Korea.
Hoon-Chul KangDivision of Pediatric Neurology, Department of Pediatrics, Pediatric Epilepsy Clinics, Severance Children's Hospital, Epilepsy Research Institute, Yonsei University College of Medicine, Seoul 03722, South Korea.
Hyongbum Henry KimBrain Korea 21 Plus Project for Medical Sciences, Graduate Program of Nano Science and Technology, Department of Pharmacology, Yonsei University College of Medicine, Seoul 03722, South Korea; Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul 03722, South Korea; Center for Nanomedicine, Institute for Basic Science, Yonsei University, Seoul 03722, South Korea. Electronic address: hkim1@yuhs.ac.
Jeong Ho LeeBrain Korea 21 Plus Project, Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science & Technology, Daejeon 34141, South Korea. Electronic address: jhlee4246@kaist.ac.kr.
Yonsei University · KRKorea Advanced Institute of Science and Technology · KRHanyang University · KRKorea Institute of Science & Technology Information · KRInstitute for Basic Science · KRKorea Institute of Toxicology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Focal cortical dysplasia (FCD) is a major cause of the sporadic form of intractable focal epilepsies that require surgical treatment. It has recently been reported that brain somatic mutations in MTOR account for 15%-25% of FCD type II (FCDII), characterized by cortical dyslamination and dysmorphic neurons. However, the genetic etiologies of FCDII-affected individuals who lack the MTOR mutation remain unclear. Here, we performed deep hybrid capture and amplicon sequencing (read depth of 100×-20,012×) of five important mTOR pathway genes-PIK3CA, PIK3R2, AKT3, TSC1, and TSC2-by using paired brain and saliva samples from 40 FCDII individuals negative for MTOR mutations. We found that 5 of 40 individuals (12.5%) had brain somatic mutations in TSC1 (c.64C>T [p.Arg22Trp] and c.610C>T [p.Arg204Cys]) and TSC2 (c.4639G>A [p.Val1547Ile]), and these results were reproducible on two different sequencing platforms. All identified mutations induced hyperactivation of the mTOR pathway by disrupting the formation or function of the TSC1-TSC2 complex. Furthermore, in utero CRISPR-Cas9-mediated genome editing of Tsc1 or Tsc2 induced the development of spontaneous behavioral seizures, as well as cytomegalic neurons and cortical dyslamination. These results show that brain somatic mutations in TSC1 and TSC2 cause FCD and that in utero application of the CRISPR-Cas9 system is useful for generating neurodevelopmental disease models of somatic mutations in the brain.

Indexed as

AdolescentAnimalsBrainCell Line, TumorChildClass I Phosphatidylinositol 3-KinasesCloning, MolecularCRISPR-Cas SystemsDisease Models, AnimalEpilepsyFemaleHEK293 CellsHumansMaleMalformations of Cortical Development, Group IMiceAKT3 protein, humanClass I Phosphatidylinositol 3-KinasesMTOR protein, humanPhosphatidylinositol 3-Kinasesphosphoinositol-3 kinase regulatory subunit 2, humanPIK3CA protein, humanProto-Oncogene Proteins c-aktSirolimusTOR Serine-Threonine KinasesTSC1 protein, humanTsc1 protein, mouseTSC2 protein, humanTsc2 protein, mouseTuberous Sclerosis Complex 1 ProteinTuberous Sclerosis Complex 2 ProteinTumor Suppressor Proteinsbrain mosaicismbrain somatic mutationCRISPR-Cas9 genome editingfocal cortical dysplasiaintractable epilepsyTSC1TSC2

Identifiers

PMID28215400
PMCPMC5339289
OpenAlexW2588142332

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.