Evidence map›Paper›PMID 28214548›Full record

ArticleBiochimica et biophysica acta. General subjects2017

Global stability of an α-ketoglutarate-dependent dioxygenase (TauD) and its related complexes.

Kate L Henderson, Mingjie Li, Salette Martinez, Edwin A Lewis, Robert P Hausinger, Joseph P Emerson

Abstract read
In one paragraph

Article in Biochimica et biophysica acta. General subjects, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  4. Oleic Acid Dissolves cGAS-DNA Phase Separation to Inhibit Immune Surveillance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  5. Article
  6. Article
  7. The Irving-Williams series and the 2-His-1-carboxylate facial triad: a thermodynamic study of MnJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kate L HendersonDepartment of Chemistry, Mississippi State University, Mississippi State, MS 39762, United States.
Mingjie LiDepartment of Chemistry, Mississippi State University, Mississippi State, MS 39762, United States.
Salette MartinezDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824-4320, United States.
Edwin A LewisDepartment of Chemistry, Mississippi State University, Mississippi State, MS 39762, United States.
Robert P HausingerDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824-4320, United States.
Joseph P EmersonDepartment of Chemistry, Mississippi State University, Mississippi State, MS 39762, United States. Electronic address: jemerson@chemistry.msstate.edu.
Mississippi State University · USMichigan State University · US

Funding

Study of alpha-ketoglutarate-dependent dioxygenasesR01GM063584 · NIGMS · MICHIGAN STATE UNIVERSITY · PI HAUSINGER, ROBERT P · 2002 to 2014
$3.8M
NIGMS NIH HHS R01 GM063584
6 · The paper itself

Abstract

backgroundTauD is a nonheme iron(II) and α-ketoglutarate (αKG) dependent dioxygenase, and a member of a broader family of enzymes that oxidatively decarboxylate αKG to succinate and carbon dioxide thereby activating O

methodsThermal denaturation of TauD and its enzyme-taurine, enzyme-αKG, and enzyme-taurine-αKG complexes are explored using circular dichroism (CD) spectroscopy and differential scanning calorimetry (DSC).

resultsTaurine binding is endothermic (+26kcal/mol) and entropically driven that includes burial of hydrophobic surfaces to close the lid domain. Binding of αKG is enthalpically favorable and shows cooperativity with taurine binding, where the change in enthalpy associated with αKG binding (δΔH

conclusionsThe intermolecular interactions that govern taurine and αKG binding impact the global stability of TauD and its complexes, with clear and dramatic cooperativity between substrate and cofactor. GENERAL SIGNIFICANCE: Thermal denaturation of TauD and its enzyme-taurine, enzyme-αKG, and enzyme-taurine-αKG complexes each exhibited increased temperature stability over the free enzyme. Through deconvolution of the energetic profiles for all species studied, a thermodynamic cycle was generated that shows significant cooperativity between substrate and cofactor binding which continues to clarity the events leading up O

Indexed as

Alpha-Ketoglutarate-Dependent Dioxygenase FTOBinding SitesEscherichia coliFerrous CompoundsIronKetoglutaric AcidsKineticsOxidation-ReductionOxygenProtein BindingProtein StabilitySubstrate SpecificitySuccinic AcidTaurineTemperatureThermodynamicsAlpha-Ketoglutarate-Dependent Dioxygenase FTOFerrous CompoundsIronKetoglutaric AcidsOxygenSuccinic AcidTaurineAlpha-ketoglutarateAnd thermal stabilityCircular dichroismDifferential scanning calorimetryNonheme iron(II)Taurine

Identifiers

PMID28214548
PMCPMC5453726
OpenAlexW2588057706

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.