Evidence map›Paper›PMID 28213629›Full record

ArticleFunctional & integrative genomics2017

Transcriptome-based SNP discovery by GBS and the construction of a genetic map for olive.

Ahmet İpek, Meryem İpek, Sezai Ercişli, Nesrin Aktepe Tangu

Abstract read
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Article in Functional & integrative genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ahmet İpekFaculty of Agriculture, Horticulture Department, Uludag University, Bursa, Turkey. maipek@uludag.edu.tr.
Meryem İpekFaculty of Agriculture, Horticulture Department, Uludag University, Bursa, Turkey.
Sezai ErcişliFaculty of Agriculture, Horticulture Department, Atatürk University, Erzurum, Turkey.
Nesrin Aktepe TanguAtatürk Horticultural Central Research Institute, Yalova, Turkey.

Funding

The Commission of Scientific Research Projects of Uludag University OUAP(Z) - 2013/33
6 · The paper itself

Abstract

Molecular markers located in the genic regions of plants are valuable tools for the identification of candidate genes of economically important traits and consequent use in marker-assisted selection (MAS). In the past, simple sequence repeat markers (SSRs) and single-nucleotide polymorphisms (SNPs) located in expressed sequence tags (ESTs) were developed by sequencing RNA derived from different plant tissues, which involves laborious RNA extraction, mRNA isolation, and cDNA synthesis. In order to develop SNP markers located in olive transcriptomes, we used the recently developed genotyping-by-sequencing (GBS) technique. An analysis was done for 125 olive DNA samples (123 DNA samples from a cross-pollinated F

Indexed as

Genetic LinkageGenome, PlantPolymorphism, Single NucleotideTranscriptomeGenotyping TechniquesMicrosatellite RepeatsOleaQuantitative Trait LociWhole Genome SequencingCAPSGenetic mappingOliveSNPSSRTranscriptome

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.