Evidence map›Paper›PMID 28212676›Full record

ArticleParasites & vectors2017

Genetic diversity and selection of three nuclear genes in Schistosoma japonicum populations.

Yaqi Li, Mingbo Yin, Qunfeng Wu, Donald P McManus, David Blair, Hongyan Li, Bin Xu, Xiaojin Mo, Zheng Feng, Wei Hu

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Yaqi LiSchool of Life Science, Fudan University, Songhu Road 2005, Shanghai, China.
Mingbo YinSchool of Life Science, Fudan University, Songhu Road 2005, Shanghai, China. yinm@fudan.edu.cn.
Qunfeng WuSchool of Life Science, Fudan University, Songhu Road 2005, Shanghai, China.
Donald P McManusQIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD, 4029, Australia.
David BlairCollege of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia.
Hongyan LiSchool of Life Science, Fudan University, Songhu Road 2005, Shanghai, China.
Bin XuNational Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention, 207 Rui Jin Er Road, Shanghai, 200025, China.
Xiaojin MoNational Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention, 207 Rui Jin Er Road, Shanghai, 200025, China.
Zheng FengNational Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention, 207 Rui Jin Er Road, Shanghai, 200025, China.
Wei HuSchool of Life Science, Fudan University, Songhu Road 2005, Shanghai, China. huw@fudan.edu.cn.
Fudan University · CNNational Institute for Parasitic Diseases · CNJames Cook University · AUQIMR Berghofer Medical Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe blood fluke, Schistosoma japonicum still causes severe disease in China, the Philippines and Indonesia. Although there have been some studies the molecular epidemiology of this persistent and harmful parasite, few have explored the possibility and implications of selection in S. japonicum populations.

methodsWe analyzed diversity and looked for evidence of selection at three nuclear genes (SjIpp2, SjFabp and SjT22.6) in 13 S. japonicum populations.

resultsSjT22.6 was found to exhibit high nucleotide diversity and was under positive selection in the mountainous region of mainland China. As a tegumental protein, its secondary and tertiary structure differed between S. japonicum strains from the mountainous and lakes regions. In contrast, SjIpp2 and SjFabp had relatively low levels of nucleotide diversity and did not show significant departure from neutrality.

conclusionsAs a tegument-associated antigen-encoding gene of S. japonicum, SjT22.6 has high nucleotide diversity and appears to be under positive selection in the mountainous region of mainland China.

Indexed as

Genes, HelminthGenetic VariationSelection, GeneticAnimalsAntigens, HelminthChinaSchistosoma japonicumSchistosomiasis japonicaSequence Analysis, DNAAntigens, HelminthGenetic diversityNatural selectionNuclear genesSchistosoma japonicumTegument-associated antigen

Identifiers

PMID28212676
PMCPMC5316221
OpenAlexW2588006203

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.