Evidence map›Paper›PMID 28212609›Full record

ArticleBMC genomics2017

Exogenous glutamate rapidly induces the expression of genes involved in metabolism and defense responses in rice roots.

Chia-Cheng Kan, Tsui-Yun Chung, Hsin-Yu Wu, Yan-An Juo, Ming-Hsiun Hsieh

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
16.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 118 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Chia-Cheng KanInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.
Tsui-Yun ChungInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.
Hsin-Yu WuInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.
Yan-An JuoInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.
Ming-Hsiun HsiehInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan. ming@gate.sinica.edu.tw.ORCID 0000-0003-2703-9979
Institute of Plant and Microbial Biology, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGlutamate is an active amino acid. In addition to protein synthesis and metabolism, increasing evidence indicates that glutamate may also function as a signaling molecule in plants. Still, little is known about the nutritional role of glutamate and genes that are directly regulated by glutamate in rice.

resultsExogenous glutamate could serve as a nitrogen nutrient to support the growth of rice seedlings, but it was not as effective as ammonium nitrate or glutamine. In nitrogen-starved rice seedlings, glutamate was the most abundant free amino acid and feeding of glutamate rapidly and significantly increased the endogenous levels of glutamine, but not glutamate. These results indicated that glutamate was quickly metabolized and converted to the other nitrogen-containing compounds in rice. Transcriptome analysis revealed that at least 122 genes involved in metabolism, transport, signal transduction, and stress responses in the roots were rapidly induced by 2.5 mM glutamate within 30 min. Many of these genes were also up-regulated by glutamine and ammonium nitrate. Still, we were able to identify some transcription factor, kinase/phosphatase, and elicitor-responsive genes that were specifically or preferentially induced by glutamate.

conclusionsGlutamate is a functional amino acid that plays important roles in plant nutrition, metabolism, and signal transduction. The rapid and specific induction of transcription factor, kinase/phosphatase and elicitor-responsive genes suggests that glutamate may efficiently amplify its signal and interact with other signaling pathways to regulate metabolism, growth and defense responses in rice.

Indexed as

Dose-Response Relationship, DrugGene Expression Regulation, PlantGlutamic AcidNitrogenOryzaPlant RootsSeedlingsTranscription FactorsGlutamic AcidNitrogenTranscription FactorsDefense responseGene expressionGlutamateMetabolismRiceSignal transductionTranscription factor

Identifiers

PMID28212609
PMCPMC5316172
OpenAlexW2588058611

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.