Evidence map›Paper›PMID 28212376›Full record

ArticlePLoS genetics2017

The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system.

Tobias Sahr, Christophe Rusniok, Francis Impens, Giulia Oliva, Odile Sismeiro, Jean-Yves Coppée, Carmen Buchrieser

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. Bacterial small regulatory RNAs.Nature reviews. Microbiology · 2026
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  5. Molecular evolution and adaptations ofFrontiers in cellular and infection microbiology · 2026
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  10. Control ofmBio · 2025
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  11. Small molecule communication ofMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  12. Ecology ofBiofilm · 2024
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Conceptual model to informFrontiers in cellular and infection microbiology · 2023
    Review
  18. Article
  19. TheApplied and environmental microbiology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Tobias SahrInstitut Pasteur, Biologie des Bactéries Intracellulaires, Paris France.
Christophe RusniokInstitut Pasteur, Biologie des Bactéries Intracellulaires, Paris France.
Francis ImpensInstitut Pasteur, Unité des Interactions Bactéries-Cellules, Inserm U604, INRA Unité sous-contrat, Paris, France.
Giulia OlivaInstitut Pasteur, Biologie des Bactéries Intracellulaires, Paris France.
Odile SismeiroInstitut Pasteur, Transcriptome and EpiGenome, BioMics, Center for Innovation and Technological Research, Paris, France.
Jean-Yves CoppéeInstitut Pasteur, Transcriptome and EpiGenome, BioMics, Center for Innovation and Technological Research, Paris, France.
Carmen BuchrieserInstitut Pasteur, Biologie des Bactéries Intracellulaires, Paris France.ORCID 0000-0003-3477-9190
Centre National de la Recherche Scientifique · FRInstitut Pasteur · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The carbon storage regulator protein CsrA regulates cellular processes post-transcriptionally by binding to target-RNAs altering translation efficiency and/or their stability. Here we identified and analyzed the direct targets of CsrA in the human pathogen Legionella pneumophila. Genome wide transcriptome, proteome and RNA co-immunoprecipitation followed by deep sequencing of a wild type and a csrA mutant strain identified 479 RNAs with potential CsrA interaction sites located in the untranslated and/or coding regions of mRNAs or of known non-coding sRNAs. Further analyses revealed that CsrA exhibits a dual regulatory role in virulence as it affects the expression of the regulators FleQ, LqsR, LetE and RpoS but it also directly regulates the timely expression of over 40 Dot/Icm substrates. CsrA controls its own expression and the stringent response through a regulatory feedback loop as evidenced by its binding to RelA-mRNA and links it to quorum sensing and motility. CsrA is a central player in the carbon, amino acid, fatty acid metabolism and energy transfer and directly affects the biosynthesis of cofactors, vitamins and secondary metabolites. We describe the first L. pneumophila riboswitch, a thiamine pyrophosphate riboswitch whose regulatory impact is fine-tuned by CsrA, and identified a unique regulatory mode of CsrA, the active stabilization of RNA anti-terminator conformations inside a coding sequence preventing Rho-dependent termination of the gap operon through transcriptional polarity effects. This allows L. pneumophila to regulate the pentose phosphate pathway and the glycolysis combined or individually although they share genes in a single operon. Thus the L. pneumophila genome has evolved to acclimate at least five different modes of regulation by CsrA giving it a truly unique position in its life cycle.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBase SequenceBlotting, NorthernEvolution, MolecularFeedback, PhysiologicalGene Expression ProfilingGenome, BacterialGlycolysisHost-Pathogen InteractionsHumansLegionella pneumophilaLegionnaires' DiseaseMutationOligonucleotide Array Sequence AnalysisOperonBacterial ProteinsCsrA protein, Legionella pneumophilaRepressor ProteinsRiboswitchRNA, Messenger

Identifiers

PMID28212376
PMCPMC5338858
OpenAlexW2588260183

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.