Evidence map›Paper›PMID 28211917›Full record

ArticleScientific reports2017

Concentration-dependent oligomerization of an alpha-helical antifreeze polypeptide makes it hyperactive.

Sheikh Mahatabuddin, Yuichi Hanada, Yoshiyuki Nishimiya, Ai Miura, Hidemasa Kondo, Peter L Davies, Sakae Tsuda

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. An Ultrapotent, Ultraeconomical, Antifreeze Polypeptide.Advanced materials (Deerfield Beach, Fla.) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sheikh MahatabuddinGraduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan.
Yuichi HanadaGraduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan.
Yoshiyuki NishimiyaBioproduction Research Institute, ioproduction Research Institute and OPERANDO Open Innovation Laboratory, National Institute of Advanced Industrial Science and Technology (AIST), Sapporo 062-8517, Japan.
Ai MiuraBioproduction Research Institute, ioproduction Research Institute and OPERANDO Open Innovation Laboratory, National Institute of Advanced Industrial Science and Technology (AIST), Sapporo 062-8517, Japan.
Hidemasa KondoGraduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan.
Peter L DaviesProtein Function Discovery Group and Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, K7L 3N6, Canada.
Sakae TsudaGraduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A supersoluble 40-residue type I antifreeze protein (AFP) was discovered in a righteye flounder, the barfin plaice (bp). Unlike all other AFPs characterized to date, bpAFP transitions from moderately-active to hyperactive with increasing concentration. At sub-mM concentrations, bpAFP bound to pyramidal planes of ice to shape it into a bi-pyramidal hexagonal trapezohedron, similarly to the other moderately-active AFPs. At mM concentrations, bpAFP uniquely underwent further binding to the whole ice crystal surface including the basal planes. The latter caused a bursting ice crystal growth normal to c-axis, 3 °C of high thermal hysteresis, and alteration of an ice crystal into a smaller lemon-shaped morphology, all of which are well-known properties of hyperactive AFPs. Analytical ultracentrifugation showed this activity transition is associated with oligomerization to form tetramer, which might be the forerunner of a naturally occurring four-helix-bundle AFP in other flounders.

Indexed as

Protein Conformation, alpha-HelicalProtein MultimerizationAllergensAnimalsAntifreeze ProteinsFish ProteinsHydrogen-Ion ConcentrationPeptidesProtein StabilitySolubilityAllergensAntifreeze ProteinsFish ProteinsPeptides

Identifiers

PMID28211917
PMCPMC5304152

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.