ArticleScientific reports2017
Dissection of genomic features and variations of three pathotypes of Puccinia striiformis through whole genome sequencing.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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30 citing papers in PubMed, 61 citations in OpenAlex.
- A transcriptome-wide approach for rapid pathotype discrimination of Puccinia striiformis f. sp. tritici in north-western India.Archives of microbiology · 2026Article
- Two divergent haploid nuclei shaped the landscape of population diversity in wheat stripe rust Puccinia striiformis f. sp. tritici.Communications biology · 2026Article
- Use of Field pathogenomics approach for Puccinia striiformis f. sp. tritici race identification and phylogenomic delineation in North India.World journal of microbiology & biotechnology · 2025Article
- Migration of wheat stripe rust from the primary oversummering region to neighboring regions in China.Communications biology · 2025Article
- Uncovering the history of recombination and population structure in western Canadian stripe rust populations through mating type alleles.BMC biology · 2023Article
- Genomic analysis, trajectory tracking, and field surveys reveal sources and long-distance dispersal routes of wheat stripe rust pathogen in China.Plant communications · 2023Article
- Molecular Mechanisms of the Co-Evolution of Wheat and Rust Pathogens.Plants (Basel, Switzerland) · 2023Review
- Article
- Candidate effectors for leaf rust resistance geneFrontiers in microbiology · 2023Article
- Virulence and genetic analysis ofFrontiers in plant science · 2023Article
- Integrative analysis of the multi-omics reveals the stripe rust fungus resistance mechanism of theFrontiers in plant science · 2023Article
- Current Status and Future Perspectives of Genomics Research in the Rust Fungi.International journal of molecular sciences · 2022Review
- Comparative Genome Analyses of Plant Rust Pathogen Genomes Reveal a Confluence of Pathogenicity Factors to Quell Host Plant Defense Responses.Plants (Basel, Switzerland) · 2022Article
- Infection Strategies and Pathogenicity of Biotrophic Plant Fungal Pathogens.Frontiers in microbiology · 2022Review
- Genetic Diversity and Population Structure Reveal Cryptic Genetic Variation and Long Distance Migration ofFrontiers in microbiology · 2022Article
- Whole genome resequencing and comparative genome analysis of three Puccinia striiformis f. sp. tritici pathotypes prevalent in India.PloS one · 2022Article
- Review
- Genome-Wide Analysis of Four Pathotypes of Wheat Rust Pathogen (Journal of fungi (Basel, Switzerland) · 2021Article
- Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range Expansion.Genome biology and evolution · 2021Article
- Article
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Stripe rust of wheat, caused by Puccinia striiformis f. sp. tritici, is one of the important diseases of wheat. We used NGS technologies to generate a draft genome sequence of two highly virulent (46S 119 and 31) and a least virulent (K) pathotypes of P. striiformis from the Indian subcontinent. We generated ~24,000-32,000 sequence contigs (N50;7.4-9.2 kb), which accounted for ~86X-105X sequence depth coverage with an estimated genome size of these pathotypes ranging from 66.2-70.2 Mb. A genome-wide analysis revealed that pathotype 46S 119 might be highly evolved among the three pathotypes in terms of year of detection and prevalence. SNP analysis revealed that ~47% of the gene sets are affected by nonsynonymous mutations. The extracellular secreted (ES) proteins presumably are well conserved among the three pathotypes, and perhaps purifying selection has an important role in differentiating pathotype 46S 119 from pathotypes K and 31. In the present study, we decoded the genomes of three pathotypes, with 81% of the total annotated genes being successfully assigned functional roles. Besides the identification of secretory genes, genes essential for pathogen-host interactions shall prove this study as a huge genomic resource for the management of this disease using host resistance.
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