Evidence map›Paper›PMID 28209973›Full record

ArticleScientific reports2017

Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage ΦAB6 tailspike protein.

I-Ming Lee, I-Fan Tu, Feng-Ling Yang, Tzu-Ping Ko, Jiahn-Haur Liao, Nien-Tsung Lin, Chung-Yi Wu, Chien-Tai Ren, Andrew H-J Wang, Ching-Ming Chang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Journal of oral microbiology · 2025
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  7. Lytic Capsule-SpecificViruses · 2024
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  9. mBio · 2024
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  10. NewInternational journal of molecular sciences · 2024
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  11. Article
  12. Phage-encoded depolymerases as a strategy for combating multidrug-resistantFrontiers in cellular and infection microbiology · 2024
    Review
  13. Insights into theInternational journal of molecular sciences · 2023
    Article
  14. International journal of molecular sciences · 2023
    Article
  15. Article
  16. Review
  17. Review
  18. Host Range Expansion ofJournal of virology · 2022
    Article
  19. The Specific Capsule Depolymerase of Phage PMK34 SensitizesAntibiotics (Basel, Switzerland) · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

I-Ming LeeInstitute of Biochemical Sciences, National Taiwan University, Taipei 106, Taiwan.
I-Fan TuInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Feng-Ling YangInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Tzu-Ping KoInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Jiahn-Haur LiaoInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Nien-Tsung LinMaster program in Microbiology and Immunology, Tzu Chi University, Hualien 970, Taiwan.
Chung-Yi WuGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Chien-Tai RenGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Andrew H-J WangInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Ching-Ming ChangInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Kai-Fa HuangInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Shih-Hsiung WuInstitute of Biochemical Sciences, National Taiwan University, Taipei 106, Taiwan.
Institute of Biological Chemistry, Academia Sinica · TWGenomics Research Center, Academia Sinica · TWNational Taiwan University · TWTzu Chi University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With an increase in antibiotic-resistant strains, the nosocomial pathogen Acinetobacter baumannii has become a serious threat to global health. Glycoconjugate vaccines containing fragments of bacterial exopolysaccharide (EPS) are an emerging therapeutic to combat bacterial infection. Herein, we characterize the bacteriophage ΦAB6 tailspike protein (TSP), which specifically hydrolyzed the EPS of A. baumannii strain 54149 (Ab-54149). Ab-54149 EPS exhibited the same chemical structure as two antibiotic-resistant A. baumannii strains. The ΦAB6 TSP-digested products comprised oligosaccharides of two repeat units, typically with stoichiometric pseudaminic acid (Pse). The 1.48-1.89-Å resolution crystal structures of an N-terminally-truncated ΦAB6 TSP and its complexes with the semi-hydrolyzed products revealed a trimeric β-helix architecture that bears intersubunit carbohydrate-binding grooves, with some features unusual to the TSP family. The structures suggest that Pse in the substrate is an important recognition site for ΦAB6 TSP. A region in the carbohydrate-binding groove is identified as the determinant of product specificity. The structures also elucidated a retaining mechanism, for which the catalytic residues were verified by site-directed mutagenesis. Our findings provide a structural basis for engineering the enzyme to produce desired oligosaccharides, which is useful for the development of glycoconjugate vaccines against A. baumannii infection.

Indexed as

Molecular Docking SimulationAcinetobacter baumanniiBinding SitesGlycoside HydrolasesOligosaccharidesPolysaccharides, BacterialProtein BindingViral Tail ProteinsGlycoside HydrolasesOligosaccharidesPolysaccharides, Bacterialtailspike protein, bacteriophageViral Tail Proteins

Identifiers

PMID28209973
PMCPMC5314372
OpenAlexW2588286059

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.