ArticleBMC genomics2017
Plastome phylogeny and early diversification of Brassicaceae.
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.
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98 citing papers in PubMed.
- The Brassicaceae then and now: advancements in the past three decades, a review.Annals of botany · 2026Review
- Mitoplastomic discordance in Brassicaceae phylogenomics confirms the complex evolutionary history of the family.Annals of botany · 2026Article
- A global phylogenetic framework for Diospyros L. (Ebenaceae, Ericales): enhanced taxon and sample coverage through NGS, Sanger sequencing and herbariomics.Annals of botany · 2026Article
- Chloroplast Phylogenomics and Evolutionary History of the Alpine EndemicInternational journal of molecular sciences · 2026Article
- Plastid genomes and phylogenomic relationships in Cheilosoideae, a poorly known early-diverging subfamily of Euphorbiaceae.BMC plant biology · 2026Article
- Repeated loss of plastid NDH during evolution of land plants.Annals of botany · 2026Review
- Chloroplast genome comparative analysis and phylogenetic relationships of 15 Syringa species (Oleaceae).Genetics and molecular biology · 2026Article
- Chloroplast genomes of nineFrontiers in plant science · 2026Article
- Evolution of Repetitive Genomic Content and Gene Families Over Geo-Climatic Gradients in Brassicaceae.Ecology and evolution · 2025Article
- Insights into the plastome evolution and phylogenetic relationships of Lepidium (Brassicaceae).BMC plant biology · 2025Article
- Comparative Analysis ofGenes · 2025Article
- Largest genome assembly in Brassicaceae: retrotransposon-driven genome expansion and karyotype evolution in Matthiola incana.Plant biotechnology journal · 2025Article
- Plastomic studies inform the mechanisms of edaphic adaptation in North American species in the tribe Thelypodieae (Brassicaceae).American journal of botany · 2025Article
- Eight NewGenes · 2025Article
- Comparative Analysis of Plastomes ofGenes · 2025Article
- The complete chloroplast genome sequence of the endangered species:Mitochondrial DNA. Part B, Resources · 2025Article
- Uncovering hundreds of exogenous and endogenous RNA viral RdRp sequences amongst uncharacterized sequences in public protein databases.Virus evolution · 2025Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2025Article
- Genomes of Meniocus linifolius and Tetracme quadricornis reveal the ancestral karyotype and genomic features of core Brassicaceae.Plant communications · 2024Article
- Complete Chloroplast Genome ofGenes · 2024Article
38 more citing papers are in PubMed but not listed here.
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Authors and funding
11 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe family Brassicaceae encompasses diverse species, many of which have high scientific and economic importance. Early diversifications and phylogenetic relationships between major lineages or clades remain unclear. Here we re-investigate Brassicaceae phylogeny with complete plastomes from 51 species representing all four lineages or 5 of 6 major clades (A, B, C, E and F) as identified in earlier studies.
resultsBayesian and maximum likelihood phylogenetic analyses using a partitioned supermatrix of 77 protein coding genes resulted in nearly identical tree topologies exemplified by highly supported relationships between clades. All four lineages were well identified and interrelationships between them were resolved. The previously defined Clade C was found to be paraphyletic (the genus Megadenia formed a separate lineage), while the remaining clades were monophyletic. Clade E (lineage III) was sister to clades B + C rather than to all core Brassicaceae (clades A + B + C or lineages I + II), as suggested by a previous transcriptome study. Molecular dating based on plastome phylogeny supported the origin of major lineages or clades between late Oligocene and early Miocene, and the following radiative diversification across the family took place within a short timescale. In addition, gene losses in the plastomes occurred multiple times during the evolutionary diversification of the family.
conclusionsPlastome phylogeny illustrates the early diversification of cruciferous species. This phylogeny will facilitate our further understanding of evolution and adaptation of numerous species in the model family Brassicaceae.
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