Evidence map›Paper›PMID 28207847›Full record

ArticlePloS one2017

Microarray analysis of Arabidopsis WRKY33 mutants in response to the necrotrophic fungus Botrytis cinerea.

Arjun Sham, Khaled Moustafa, Shamma Al-Shamisi, Sofyan Alyan, Rabah Iratni, Synan AbuQamar

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Biocontrol Potential of Endophytic Actinobacteria againstJournal of fungi (Basel, Switzerland) · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Co-expression Networks in Predicting Transcriptional Gene Regulation.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Transcriptome Profiles of Strawberry (Frontiers in plant science · 2019
    Article
  17. CRISPR/Cas9-Mediated Multiplex Genome Editing of theInternational journal of molecular sciences · 2018
    Article
  18. Article
  19. Frontiers in microbiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Arjun ShamDepartment of Biology, United Arab Emirates University, Al-Ain, United Arab Emirates.
Khaled MoustafaConservatoire National des Arts et Métiers, Paris, France.
Shamma Al-ShamisiDepartment of Biology, United Arab Emirates University, Al-Ain, United Arab Emirates.
Sofyan AlyanDepartment of Biology, United Arab Emirates University, Al-Ain, United Arab Emirates.
Rabah IratniDepartment of Biology, United Arab Emirates University, Al-Ain, United Arab Emirates.
Synan AbuQamarDepartment of Biology, United Arab Emirates University, Al-Ain, United Arab Emirates.ORCID http://orcid.org/0000-0002-2129-7689

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The WRKY33 transcription factor was reported for resistance to the necrotrophic fungus Botrytis cinerea. Using microarray-based analysis, we compared Arabidopsis WRKY33 overexpressing lines and wrky33 mutant that showed altered susceptibility to B. cinerea with their corresponding wild-type plants. In the wild-type, about 1660 genes (7% of the transcriptome) were induced and 1054 genes (5% of the transcriptome) were repressed at least twofold at early stages of inoculation with B. cinerea, confirming previous data of the contribution of these genes in B. cinerea resistance. In Arabidopsis wild-type plant infected with B. cinerea, the expressions of the differentially expressed genes encoding for proteins and metabolites involved in pathogen defense and non-defense responses, seem to be dependent on a functional WRKY33 gene. The expression profile of 12-oxo-phytodienoic acid- and phytoprostane A1-treated Arabidopsis plants in response to B. cinerea revealed that cyclopentenones can also modulate WRKY33 regulation upon inoculation with B. cinerea. These results support the role of electrophilic oxylipins in mediating plant responses to B. cinerea infection through the TGA transcription factor. Future directions toward the identification of the molecular components in cyclopentenone signaling will elucidate the novel oxylipin signal transduction pathways in plant defense.

Indexed as

ArabidopsisArabidopsis ProteinsBotrytisDisease ResistanceGene Expression Regulation, PlantMicroarray AnalysisMutationPlant DiseasesPlants, Genetically ModifiedTranscription FactorsArabidopsis ProteinsTranscription FactorsWRKY33 protein, Arabidopsis

Identifiers

PMID28207847
PMCPMC5313235

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.