Evidence map›Paper›PMID 28205286›Full record

ArticleJournal of clinical laboratory analysis2018

Association of MMP-9 gene polymorphisms with nephrolithiasis patients.

Atheer Awad Mehde, Wesen Adel Mehdi, Faridah Yusof, Raha Ahmed Raus, Zaima Azira Zainal Abidin, Hamid Ghazali, Azlina Abd Rahman

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Article in Journal of clinical laboratory analysis, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

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  5. A functionalFrontiers in medicine · 2023
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  9. Association of MMP-9 gene polymorphisms with nephrolithiasis patients.Journal of clinical laboratory analysis · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Atheer Awad MehdeDepartment of Biotechnology Engineering, Faculty of Engineering, International Islamic University Malaysia, Kuala Lumpur, Malaysia.
Wesen Adel MehdiBiomedical, Magnetic and Semi Conductive Materials Application and Research Center, Sakarya University, Sakarya, Turkey.ORCID http://orcid.org/0000-0001-7551-133X
Faridah YusofDepartment of Biotechnology Engineering, Faculty of Engineering, International Islamic University Malaysia, Kuala Lumpur, Malaysia.
Raha Ahmed RausDepartment of Biotechnology Engineering, Faculty of Engineering, International Islamic University Malaysia, Kuala Lumpur, Malaysia.
Zaima Azira Zainal AbidinDepartment of Biotechnology, Faculty of Science, International Islamic University Malaysia, Kuantan, Malaysia.
Hamid GhazaliDepartment of Urology, Hospital Tengku Ampuan Afzan, Kuantan, Malaysia.
Azlina Abd RahmanDepartment of Pathology, Hospital Tengku Ampuan Afzan, Kuantan, Malaysia.
International Islamic University Malaysia · MYHospital Tengku Ampuan Afzan · MYSakarya University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNephrolithiasis is one of the causes which lead to chronic kidney disease (CKD). Matrix metalloproteinases (MMPs) are endopeptidases degrading extracellular matrix which correlate with the pathogenesis of atherosclerosis. The current study was designed to analyze the association of (R279Q, C1562T) polymorphism of MMP-9 with nephrolithiasis patients.

methodsGenotyping of MMP-9/R279Q and of MMP-9/C1562T polymorphism were carried out by PCR-based restriction digestion method. Serum level of MMP-9, oxidative stress marker, MDA, and uric acid were measured in patients and control.

resultsAllele frequencies of the MMP-9/C1562T polymorphism for C and T allele were 71.25% and 28.75% in patients, 87.08% and 12.92% in control respectively. The homozygote TT was more frequent in the nephrolithiasis patients group, while T allele frequency was significantly higher in the nephrolithiasis patients group than in the control group. The patients with CT and TT genotype showed a significant increase in serum MMP-9, Total Oxidant Status (TOS), Oxidative Stress Index (OSI), Malondialdehyde (MDA), and uric acid when compared to CC genotype in patients with nephrolithiasis. The R279Q polymorphism site with regard to the relationship with nephrolithiasis was not significant.

conclusionThe result indicates that patients with TT genotype had an increased risk of stones. Also, the results demonstrate that TT allele of the C1562T polymorphism in the MMP-9gene is related with an increase of oxidative stress in nephrolithiasis patients and may possibly impose a risk for cardiovascular diseases in patients with TT genotype of MMP-9.

Indexed as

AdultCase-Control StudiesGene FrequencyGenetic Predisposition to DiseaseHumansMalondialdehydeMatrix Metalloproteinase 9Middle AgedNephrolithiasisOxidative StressPolymorphism, GeneticMalondialdehydeMatrix Metalloproteinase 9malondialdehydeMMP-9 gene polymorphismnephrolithiasistotal antioxidant status

Identifiers

PMID28205286
PMCPMC6817110
OpenAlexW2588356522

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.