Evidence map›Paper›PMID 28204542›Full record

ArticleNucleic acids research2017

Molecular determinants for CRISPR RNA maturation in the Cas10-Csm complex and roles for non-Cas nucleases.

Forrest C Walker, Lucy Chou-Zheng, Jack A Dunkle, Asma Hatoum-Aslan

Abstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Structural insights into RNA recognition by theProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Type III CRISPR-Cas: beyond the Cas10 effector complex.Trends in biochemical sciences · 2024
    Review
  9. Genetic Engineering of Therapeutic Phages Using Type III CRISPR-Cas Systems.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Structures of an active type III-A CRISPR effector complex.Structure (London, England : 1993) · 2022
    Article
  15. Article
  16. Structural and biochemical characteristics of twoThe Journal of biological chemistry · 2020
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Forrest C WalkerDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA.
Lucy Chou-ZhengDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA.
Jack A DunkleDepartment of Chemistry, University of Alabama, Tuscaloosa, AL, 35487, USA.
Asma Hatoum-AslanDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA.

Funding

Understanding CRISPR-cas regulation and its impact in staphylococciK22AI113106 · NIAID · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI HATOUM, ASMA · 2015 to 2016
$267k
6 · The paper itself

Abstract

CRISPR–Cas (Clustered regularly interspaced short palindromic repeats-CRISPR-associated proteins) is a prokaryotic immune system that destroys foreign nucleic acids in a sequence-specific manner using Cas nucleases guided by short RNAs (crRNAs). Staphylococcus epidermidis harbours a Type III-A CRISPR–Cas system that encodes the Cas10–Csm interference complex and crRNAs that are subjected to multiple processing steps. The final step, called maturation, involves a concerted effort between Csm3, a ruler protein in Cas10–Csm that measures six-nucleotide increments, and the activity of a nuclease(s) that remains unknown. Here, we elucidate the contributions of the Cas10–Csm complex toward maturation and explore roles of non-Cas nucleases in this process. Using genetic and biochemical approaches, we show that charged residues in Csm3 facilitate its self-assembly and dictate the extent of maturation cleavage. Additionally, acidic residues in Csm5 are required for efficient maturation, but recombinant Csm5 fails to cleave crRNAs in vitro. However, we detected cellular nucleases that co-purify with Cas10–Csm, and show that Csm5 regulates their activities through distinct mechanisms. Altogether, our results support roles for non-Cas nuclease(s) during crRNA maturation and establish a link between Type III-A CRISPR–Cas immunity and central nucleic acid metabolism.

Indexed as

CRISPR-Cas SystemsCRISPR-Associated ProteinsPolyribonucleotide NucleotidyltransferaseRibonucleasesRNA, BacterialStaphylococcus epidermidisCRISPR-Associated ProteinsPolyribonucleotide NucleotidyltransferaseRibonucleasesRNA, Bacterial

Identifiers

PMID28204542
PMCPMC5389561

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.