Evidence map›Paper›PMID 28203790›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2017

Seeding and Establishment of Legionella pneumophila in Hospitals: Implications for Genomic Investigations of Nosocomial Legionnaires' Disease.

Sophia David, Baharak Afshar, Massimo Mentasti, Christophe Ginevra, Isabelle Podglajen, Simon R Harris, Victoria J Chalker, Sophie Jarraud, Timothy G Harrison, Julian Parkhill

Open access · hybridAbstract readEvaluation Study
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 46 citations in OpenAlex.

  1. Microorganisms · 2026
    Review
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  3. Genomic analysis ofMicrobial genomics · 2025
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  4. Comparison of whole genome sequencing typing tools for the typing of Belgian Legionella pneumophila outbreaks isolates.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
    Article
  5. Article
  6. High performanceApplied and environmental microbiology · 2024
    Article
  7. Tropical medicine and infectious disease · 2023
    Article
  8. Rapid adaptations ofMicrobial genomics · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Characterization ofPathogens (Basel, Switzerland) · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Air-conditioner cooling towers as complex reservoirs and continuous source ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2019
    Article
  18. Article
  19. Detection ofMicroorganisms · 2018
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Sophia DavidPathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, UK.
Baharak AfsharRespiratory and Vaccine Preventable Bacteria Reference Unit, Public Health England, London, UK.
Massimo MentastiRespiratory and Vaccine Preventable Bacteria Reference Unit, Public Health England, London, UK.
Christophe GinevraFrench National Reference Center of Legionella, Hospices Civils de Lyon, France.
Isabelle PodglajenMicrobiology, Assistance publique-Hôpitaux de Paris, Hôpital Européen Georges Pompidou, Paris, France.
Simon R HarrisPathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, UK.
Victoria J ChalkerRespiratory and Vaccine Preventable Bacteria Reference Unit, Public Health England, London, UK.
Sophie JarraudFrench National Reference Center of Legionella, Hospices Civils de Lyon, France.
Timothy G HarrisonRespiratory and Vaccine Preventable Bacteria Reference Unit, Public Health England, London, UK.
Julian ParkhillPathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, UK.
Public Health England · GBGenomics (United Kingdom) · GBHospices Civils de Lyon · FRCentre Pompidou · FR

Funding

Wellcome Trust
6 · The paper itself

Abstract

Background: Legionnaires' disease is an important cause of hospital-acquired pneumonia and is caused by infection with the bacterium Legionella. Because current typing methods often fail to resolve the infection source in possible nosocomial cases, we aimed to determine whether whole-genome sequencing (WGS) could be used to support or refute suspected links between cases and hospitals. We focused on cases involving a major nosocomial-associated strain, L. pneumophila sequence type (ST) 1. Methods: WGS data from 229 L. pneumophila ST1 isolates were analyzed, including 99 isolates from the water systems of 17 hospitals and 42 clinical isolates from patients with confirmed or suspected hospital-acquired infections, as well as isolates obtained from or associated with community-acquired sources of Legionnaires' disease. Results: Phylogenetic analysis demonstrated that all hospitals from which multiple isolates were obtained have been colonized by 1 or more distinct ST1 populations. However, deep sampling of 1 hospital also revealed the existence of substantial diversity and ward-specific microevolution within the population. Across all hospitals, suspected links with cases were supported with WGS, although the degree of support was dependent on the depth of environmental sampling and available contextual information. Finally, phylogeographic analysis revealed that hospitals have been seeded with L. pneumophila via both local and international spread of ST1. Conclusions: WGS can be used to support or refute suspected links between hospitals and Legionnaires' disease cases. However, deep hospital sampling is frequently required due to the potential coexistence of multiple populations, existence of substantial diversity, and similarity of hospital isolates to local populations.

Indexed as

Computational BiologyCross InfectionGenomicsGenotypeHospitalsHumansLegionella pneumophilaLegionnaires' DiseaseMolecular EpidemiologyMolecular TypingPhylogenySequence Analysis, DNAWater Microbiologybacterial genomicsLegionella pneumophilaLegionnaires’ diseasenosocomial infectionswhole-genome sequencing

Identifiers

PMID28203790
PMCPMC5399934
OpenAlexW2588539339

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.