Evidence map›Paper›PMID 28203039›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2016

Quality Assurance using Outlier Detection on an Automatic Segmentation Method for the Cerebellar Peduncles.

Ke Li, Chuyang Ye, Zhen Yang, Aaron Carass, Sarah H Ying, Jerry L Prince

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Article in Proceedings of SPIE--the International Society for Optical Engineering, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Ke LiDept. Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218.
Chuyang YeBrainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China, 100190.
Zhen YangDept. Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218.
Aaron CarassDept. Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218.
Sarah H YingThe Johns Hopkins School of Medicine, Baltimore, MD 21205.
Jerry L PrinceDept. Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218.

Funding

Automatic Cerebellar MRI Labeling In Health and DiseaseR01NS056307 · NINDS · JOHNS HOPKINS UNIVERSITY · PI PRINCE, JERRY L · 2006 to 2015
$3.0M
NINDS NIH HHS R01 NS056307
6 · The paper itself

Abstract

Cerebellar peduncles (CPs) are white matter tracts connecting the cerebellum to other brain regions. Automatic segmentation methods of the CPs have been proposed for studying their structure and function. Usually the performance of these methods is evaluated by comparing segmentation results with manual delineations (ground truth). However, when a segmentation method is run on new data (for which no ground truth exists) it is highly desirable to efficiently detect and assess algorithm failures so that these cases can be excluded from scientific analysis. In this work, two outlier detection methods aimed to assess the performance of an automatic CP segmentation algorithm are presented. The first one is a univariate non-parametric method using a box-whisker plot. We first categorize automatic segmentation results of a dataset of diffusion tensor imaging (DTI) scans from 48 subjects as either a success or a failure. We then design three groups of features from the image data of nine categorized failures for failure detection. Results show that most of these features can efficiently detect the true failures. The second method-supervised classification-was employed on a larger DTI dataset of 249 manually categorized subjects. Four classifiers-linear discriminant analysis (LDA), logistic regression (LR), support vector machine (SVM), and random forest classification (RFC)-were trained using the designed features and evaluated using a leave-one-out cross validation. Results show that the LR performs worst among the four classifiers and the other three perform comparably, which demonstrates the feasibility of automatically detecting segmentation failures using classification methods.

Indexed as

box-whisker plotcerebellar pedunclesclassificationoutlier detectionquality assurancesegmentation

Identifiers

PMID28203039
PMCPMC5304449

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.