ArticleBMC plant biology2017
Highly predictive SNP markers for efficient selection of the wheat leaf rust resistance gene Lr16.
Article in BMC plant biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
26 citing papers in PubMed.
- Dissecting adult plant resistance to stripe and leaf rust in advanced Indian wheat breeding lines through a genome-wide association study.BMC plant biology · 2026Article
- Genome-Wide SNP Analysis Reveals Population Structure and Genetic Diversity inPlants (Basel, Switzerland) · 2025Article
- KASP: a high-throughput genotyping system and its applications in major crop plants for biotic and abiotic stress tolerance.Molecular biology reports · 2024Review
- Phenotyping and Exploitation of Kompetitive Allele-Specific PCR Assays for Genes Underpinning Leaf Rust Resistance in New Spring Wheat Mutant Lines.Current issues in molecular biology · 2024Article
- The genetics of Ug99 stem rust resistance in spring wheat variety 'Linkert'.Frontiers in plant science · 2024Article
- Conservatively transmitted alleles of key agronomic genes provide insights into the genetic basis of founder parents in bread wheat (Triticum aestivum L.).BMC plant biology · 2023Article
- Intelligent reprogramming of wheat for enhancement of fungal and nematode disease resistance using advanced molecular techniques.Frontiers in plant science · 2023Review
- Genome-wide association studies using multi-models and multi-SNP datasets provide new insights into pasmo resistance in flax.Frontiers in plant science · 2023Article
- Characterization of Brazilian spring wheat germplasm and its potential for increasing wheat genetic diversity in Canada.Frontiers in genetics · 2023Article
- Identification of Disease Resistance Parents and Genome-Wide Association Mapping of Resistance in Spring Wheat.Plants (Basel, Switzerland) · 2022Article
- Wheat Genes Associated with Different Types of Resistance against Stem Rust (Pathogens (Basel, Switzerland) · 2022Review
- Fine mapping of a recessive leaf rust resistance locus on chromosome 2BS in wheat accession CH1539.Molecular breeding : new strategies in plant improvement · 2022Article
- Interactions BetweenFrontiers in plant science · 2022Article
- Genome-Wide Association of Stem Carbohydrate Accumulation and Remobilization during Grain Growth in Bread Wheat (Plants (Basel, Switzerland) · 2021Article
- A Combination of Leaf Rust Resistance Genes, IncludingFrontiers in plant science · 2021Article
- Exome association analysis sheds light onto leaf rust (Puccinia triticina) resistance genes currently used in wheat breeding (Triticum aestivum L.).Plant biotechnology journal · 2020Article
- Comparative analysis of chromosome 2A molecular organization in diploid and hexaploid wheat.Molecular biology reports · 2020Article
- Application of Genomics Tools in Wheat Breeding to Attain Durable Rust Resistance.Frontiers in plant science · 2020Review
- Fine Mapping of the Wheat Leaf Rust Resistance GeneFrontiers in plant science · 2020Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundLr16 is a widely deployed leaf rust resistance gene in wheat (Triticum aestivum L.) that is highly effective against the North American Puccinia triticina population when pyramided with the gene Lr34. Lr16 is a seedling leaf rust resistance gene conditioning an incompatible interaction with a distinct necrotic ring surrounding the uredinium. Lr16 was previously mapped to the telomeric region of the short arm of wheat chromosome 2B. The goals of this study were to develop numerous single nucleotide polymorphism (SNP) markers for the Lr16 region and identify diagnostic gene-specific SNP marker assays for marker-assisted selection (MAS).
resultsForty-three SNP markers were developed and mapped on chromosome 2BS tightly linked with the resistance gene Lr16 across four mapping populations representing a total of 1528 gametes. Kompetitive Allele Specific PCR (KASP) assays were designed for all identified SNPs. Resistance gene analogs (RGAs) linked with the Lr16 locus were identified and RGA-based SNP markers were developed. The diagnostic potential of the SNPs co-segregating with Lr16 was evaluated in a diverse set of 133 cultivars and breeding lines. Six SNP markers were consistent with the Lr16 phenotype and are accurately predictive of Lr16 for all wheat lines/cultivars in the panel.
conclusionsLr16 was mapped relative to SNP markers in four populations. Six SNP markers exhibited high quality clustering in the KASP assay and are suitable for MAS of Lr16 in wheat breeding programs.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.