ArticleBMC genomics2017
Comparative analysis of the mitochondrial genomes of Colletotrichum gloeosporioides sensu lato: insights into the evolution of a fungal species complex interacting with diverse plants.
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed.
- Mitogenomics inMicrobial genomics · 2026Article
- Comparative Mitogenome Analysis ofJournal of fungi (Basel, Switzerland) · 2025Article
- Loss of Pathogenicity and Evidence of Horizontal Gene Transfer in Colletotrichum gloeosporioides From a Medicinal Plant.Molecular plant pathology · 2025Article
- The complete mitochondrial genome of the rice blast fungusMitochondrial DNA. Part B, Resources · 2023Article
- De novo mitochondrial genome sequencing of Cladonia subulata and phylogenetic analysis with other dissimilar species.PloS one · 2023Article
- Article
- Complete Mitochondrial Genome Sequence ofMicrobiology resource announcements · 2022Article
- Occurrence and infective potential ofBiotechnology reports (Amsterdam, Netherlands) · 2021Article
- Comparative Analysis of Mitochondrial Genome Features among FourInternational journal of molecular sciences · 2021Article
- The Mitogenomes ofFrontiers in microbiology · 2021Article
- Article
- Promising Perspectives for Detection, Identification, and Quantification of Plant Pathogenic Fungi and Oomycetes through Targeting Mitochondrial DNA.International journal of molecular sciences · 2020Review
- Mitogenomes of TwoFrontiers in microbiology · 2020Article
- Diversity of Mobile Genetic Elements in the Mitogenomes of Closely RelatedFrontiers in microbiology · 2020Article
- Characterization of the mitochondrial genome of the pathogenic fungus Scytalidium auriculariicola (Leotiomycetes) and insights into its phylogenetics.Scientific reports · 2019Article
- Colletotrichum Species Associated with Japanese Plum (Prunus salicina) Anthracnose in South Korea.Scientific reports · 2019Article
- Mobile genetic elements explain size variation in the mitochondrial genomes of four closely-related Armillaria species.BMC genomics · 2019Article
- Characterization and phylogenetic analysis of the complete mitochondrial genome of the medicinal fungus Laetiporus sulphureus.Scientific reports · 2018Article
- EndophyticMycoKeys · 2018Article
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Authors and funding
11 authors.
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Abstract
backgroundThe fungal species complex Colletotrichum gloeosporioides sensu lato contains over 20 plant-interacting species. These species exhibit different life styles (e.g., endophytes, foliar and fruit pathogens) and show considerable variation in host and tissue adaptation strategies. Accurate species delimitation in C. gloeosporioides s.l. is very challenging due to nascent lineage boundaries and phenotypic plasticity, which strongly impedes studies of the complex's host-interaction biology. In this study, we first sequenced and compared nine mitogenomes belonging to four C. gloeosporioides s.l. species lineages (C. gloeosporioides, C. fructicola, C. aenigma, and C. siamense s.l.), and evaluated the usefulness of mitogenome sequence in complementing prevailing nuclear markers for species delimitation.
resultsThe C. gloeosporioides s.l. mitogenomes ranged between 52,671 and 58,666 bp in size, and each contained an identical set of genes transcribed in the same direction. Compared with previously reported Colletotrichum mitogenomes, these mitogenomes were uniquely featured by: (1) significantly larger genome size due to richer intron content and longer intergenic region; (2) striking GC content elevation at the intergenic region; and (3) considerable intron content variation among different species lineages. Compared with nuclear DNA markers commonly used in phylogeny, the mitogenome nucleotide diversity was extremely low, yet the mitogenome alignment contained the highest number of parsimony informative sites, which allowed the generation of a high-resolution phylogeny recognizing all taxonomic lineages, including ones belonging to the very nascent C. siamense s.l. complex. The tree topology was highly congruent with the phylogeny based on nuclear marker concatenation except for lineages within C. siamense s.l. Further comparative phylogenetic analysis indicated that lineage-specific rapid divergence of GS and SOD2 markers confounded concatenation-based species relationship inference.
conclusionsThis study sheds light on the evolution of C. gloeosporioides s.l. mitogenomes and demonstrates that mitogenome sequence can complement prevailing nuclear markers in improving species delimitation accuracy. The mitogenome sequences reported will be valuable resources for further genetic studies with C. gloeosporioides s.l. and other Colletotrichum species.
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