Evidence map›Paper›PMID 28199692›Full record

ArticleJournal of experimental botany2017

Cellular localization of the Arabidopsis class 2 phytoglobin influences somatic embryogenesis.

Cara Godee, Mohamed M Mira, Owen Wally, Robert D Hill, Claudio Stasolla

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. International journal of molecular sciences · 2024
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  3. Review
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  5. Redirecting Cell Fate DuringFrontiers in plant science · 2018
    Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Cara GodeeDepartment of Plant Science, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada.
Mohamed M MiraPermanent address: Department of Botany, Faculty of Science, Tanta University, Tanta, Egypt 31527.
Owen WallyAgriculture and Agri-Food Canada/Government of Canada, Harrow Research and Development Centre, RR #2, 2585 County Rd. 20, Harrow, ON N0R 1G0, Canada.
Robert D HillDepartment of Plant Science, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada.
Claudio StasollaDepartment of Plant Science, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada.
University of Manitoba · CAAgriculture and Agri-Food Canada · CATanta University · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutation of phytoglobin 2 (Pgb2) increases the number of somatic embryos in Arabidopsis. To assess the effects of the cellular localization of Pgb2 on embryo formation, an inducible system expressing a fusion protein consisting of Pgb2 linked to the steroid-binding domain of the rat glucocorticoid receptor (GR) was introduced in a pgb2 mutant line lacking the ability to express Pgb2. In this transgenic system, Pgb2 remains in the cytoplasm but migrates into the nucleus upon exposure to dexamethasone (DEX). Pgb2 retention in the cytoplasm, in the absence of DEX, increased the number of somatic embryos and reduced the expression of MYC2 - an inhibitor of the synthesis of auxin, which is the inductive signal for embryogenesis. Removal of DEX also induced the expression of several genes involved in the biosynthesis of tryptophan and the auxin, indole-3-acetic acid (IAA). These genes included: tryptophan synthase-α subunit (TSA1) and tryptophan synthase-β subunit (TSB1), which are involved in the synthesis of tryptophan, cytochrome P450 CYP79B2 (CYP79B2) and amidase 1 (AMI1), which participate in the formation of IAA via indole-3-acetaldoxime, and several members of the YUCCA family, including YUC1 and 4, which are also required for IAA synthesis. Retention of Pgb2 in the cytoplasm by removal of DEX increased the staining pattern of IAA along the cotyledons of the explants generating embryogenic tissue. Staining for IAA decreased when Pgb2 translocated into the nucleus in response to the application of DEX. Collectively, these results suggest that the presence of Pgb2 in the cytoplasm, but not in the nucleus, phenocopies the effects of Pgb2 mutation in inducing somatic embryogenesis.

Indexed as

Plant Somatic Embryogenesis TechniquesArabidopsisArabidopsis ProteinsDexamethasoneGene Expression Regulation, PlantIndoleacetic AcidsTryptophanArabidopsis ProteinsDexamethasoneindoleacetic acidIndoleacetic Acidsphytoglobin 2 protein, ArabidopsisTryptophanAuxindexamethasonephytoglobinsomatic embryogenesis.

Identifiers

PMID28199692
PMCPMC5441859
OpenAlexW2588087836

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.