Evidence map›Paper›PMID 28199355›Full record

SynthesisPloS one2017

Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock.

Samanwoy Mukhopadhyay, Pravat K Thatoi, Abhay D Pandey, Bidyut K Das, Balachandran Ravindran, Samsiddhi Bhattacharjee, Saroj K Mohapatra

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Samanwoy MukhopadhyayNational Institute of Biomedical Genomics, Kalyani, West Bengal, India.
Pravat K ThatoiDepartment of Medicine, Sriram Chandra Bhanja Medical College and Hospital, Cuttack, Odisha, India.
Abhay D PandeyNational Institute of Biomedical Genomics, Kalyani, West Bengal, India.
Bidyut K DasDepartment of Medicine, Sriram Chandra Bhanja Medical College and Hospital, Cuttack, Odisha, India.
Balachandran RavindranInstitute of Life Sciences, NALCO Square, Bhubaneswar, Odisha, India.
Samsiddhi BhattacharjeeNational Institute of Biomedical Genomics, Kalyani, West Bengal, India.
Saroj K MohapatraNational Institute of Biomedical Genomics, Kalyani, West Bengal, India.
National Institute of Biomedical Genomics · INSriram Chandra Bhanja Medical College Hospital · INInstitute of Life Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Septic shock is a major medical problem with high morbidity and mortality and incompletely understood biology. Integration of multiple data sets into a single analysis framework empowers discovery of new knowledge about the condition that may have been missed by individual analysis of each of these datasets. Electronic search was performed on medical literature and gene expression databases for selection of transcriptomic studies done in circulating leukocytes from human subjects suffering from septic shock. Gene-level meta-analysis was conducted on the six selected studies to identify the genes consistently differentially expressed in septic shock. This was followed by pathway-level analysis using three different algorithms (ORA, GSEA, SPIA). The identified up-regulated pathway, Osteoclast differentiation pathway (hsa04380) was validated in two independent cohorts. Of the pathway, 25 key genes were selected that serve as an expression signature of Septic Shock.

Indexed as

TranscriptomeUp-RegulationAlgorithmsCell DifferentiationDatabases, FactualHumansLeukocytesModels, BiologicalOsteoclastsPrincipal Component AnalysisShock, Septic

Identifiers

PMID28199355
PMCPMC5310888
OpenAlexW2588479941

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.