Evidence map›Paper›PMID 28198665›Full record

ArticleBMC genomics2017

Exploring the key genes and signaling transduction pathways related to the survival time of glioblastoma multiforme patients by a novel survival analysis model.

Yuan Xia, Chuanwei Yang, Nan Hu, Zhenzhou Yang, Xiaoyu He, Tingting Li, Le Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
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  13. An integrated platform forFrontiers in genetics · 2022
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  18. Exploring the computational methods for protein-ligand binding site prediction.Computational and structural biotechnology journal · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Yuan XiaCollege of Computer and Information Science, Southwest University, Chongqing, 400715, People's Republic of China.
Chuanwei YangSystems Biology, the University of Texas MD Anderson Cancer Center, Houston, USA.
Nan HuCancer Center, Research Institute of Surgery, Daping Hospital, Third Military Medical University, Chongqing, 400042, People's Republic of China.
Zhenzhou YangCancer Center, Research Institute of Surgery, Daping Hospital, Third Military Medical University, Chongqing, 400042, People's Republic of China.
Xiaoyu HeChongqing Zhongdi Medical Information Technology Co., Ltd, Chongqing, 401320, People's Republic of China.
Tingting LiCollege of Mathematics and Statistics, Southwest University, Chongqing, 400715, People's Republic of China. tinalee@swu.edu.cn.
Le ZhangCollege of Computer and Information Science, Southwest University, Chongqing, 400715, People's Republic of China. zhanglcq@swu.edu.cn.
Southwest University · CNArmy Medical University · CNDaping Hospital · CNThe University of Texas MD Anderson Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThis study is to explore the key genes and signaling transduction pathways related to the survival time of glioblastoma multiforme (GBM) patients.

resultsOur results not only showed that mutually explored GBM survival time related genes and signaling transduction pathways are closely related to the GBM, but also demonstrated that our innovated constrained optimization algorithm (CoxSisLasso strategy) are better than the classical methods (CoxLasso and CoxSis strategy).

conclusionWe analyzed why the CoxSisLasso strategy can outperform the existing classical methods and discuss how to extend this research in the distant future.

Indexed as

Gene Expression Regulation, NeoplasticSignal TransductionSurvival AnalysisAlgorithmsBrain NeoplasmsGene Expression ProfilingGenetic Association StudiesGlioblastomaHumansPrognosisProportional Hazards ModelsROC CurveWorkflowCox proportional hazards model (Cox)Glioblastoma multiforme (GBM)Least absolute shrinkage and selection operator (Lasso)Signaling transduction pathwaySure independence screening (SIS)

Identifiers

PMID28198665
PMCPMC5310279
OpenAlexW2582438798

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.