Evidence map›Paper›PMID 28198417›Full record

ArticleScientific reports2017

Chilling Affects Phytohormone and Post-Embryonic Development Pathways during Bud Break and Fruit Set in Apple (Malus domestica Borkh.).

Gulshan Kumar, Khushboo Gupta, Shivalika Pathania, Mohit Kumar Swarnkar, Usha Kumari Rattan, Gagandeep Singh, Ram Kumar Sharma, Anil Kumar Singh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
7.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Molecular advances in bud dormancy in trees.Journal of experimental botany · 2024
    Review
  3. Article
  4. Article
  5. The Role of EjSVPs in Flower Initiation inInternational journal of molecular sciences · 2019
    Article
  6. Constitutive Expression of an AppleInternational journal of molecular sciences · 2019
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. I Want to (Bud) Break Free: The Potential Role ofFrontiers in plant science · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Gulshan KumarDepartment of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.
Khushboo GuptaDepartment of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.
Shivalika PathaniaDepartment of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.
Mohit Kumar SwarnkarDepartment of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.
Usha Kumari RattanDepartment of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.
Gagandeep SinghDepartment of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.
Ram Kumar SharmaDepartment of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.
Anil Kumar SinghDepartment of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.
Institute of Himalayan Bioresource Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The availability of sufficient chilling during bud dormancy plays an important role in the subsequent yield and quality of apple fruit, whereas, insufficient chilling availability negatively impacts the apple production. The transcriptome profiling during bud dormancy release and initial fruit set under low and high chill conditions was performed using RNA-seq. The comparative high number of differentially expressed genes during bud break and fruit set under high chill condition indicates that chilling availability was associated with transcriptional reorganization. The comparative analysis reveals the differential expression of genes involved in phytohormone metabolism, particularly for Abscisic acid, gibberellic acid, ethylene, auxin and cytokinin. The expression of Dormancy Associated MADS-box, Flowering Locus C-like, Flowering Locus T-like and Terminal Flower 1-like genes was found to be modulated under differential chilling. The co-expression network analysis indentified two high chill specific modules that were found to be enriched for "post-embryonic development" GO terms. The network analysis also identified hub genes including Early flowering 7, RAF10, ZEP4 and F-box, which may be involved in regulating chilling-mediated dormancy release and fruit set. The results of transcriptome and co-expression network analysis indicate that chilling availability majorly regulates phytohormone-related pathways and post-embryonic development during bud break.

Indexed as

Cold TemperaturePlant DevelopmentSignal TransductionComputational BiologyEpigenesis, GeneticFlowersFruitGene Expression ProfilingGene Expression Regulation, PlantGene OntologyGene Regulatory NetworksMalusMolecular Sequence AnnotationPlant DormancyPlant Growth RegulatorsSeasonsPlant Growth Regulators

Identifiers

PMID28198417
PMCPMC5309832
OpenAlexW2588659189

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.