Evidence map›Paper›PMID 28198392›Full record

SynthesisEuropean journal of human genetics : EJHG2017

Coffee consumption is associated with DNA methylation levels of human blood.

Yu-Hsuan Chuang, Austin Quach, Devin Absher, Themistocles Assimes, Steve Horvath, Beate Ritz

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in European journal of human genetics : EJHG, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. The Epigenetic Effects of Coffee.Molecules (Basel, Switzerland) · 2023
    Review
  9. Coffee-Derived Exosome-Like Nanoparticles: Are They the Secret Heroes?The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology · 2023
    Article
  10. Review
  11. Review
  12. Maternal caffeine intake and DNA methylation in newborn cord blood.The American journal of clinical nutrition · 2022
    Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yu-Hsuan ChuangDepartment of Epidemiology, Fielding School of Public Health, University of California, Los Angeles, CA, USA.
Austin QuachDepartment of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Devin AbsherHudsonAlpha Institute of Biotechnology, Huntsville, AL, USA.
Themistocles AssimesSchool of Medicine (Cardiovascular Medicine), Stanford University, Palo Alto, CA, USA.
Steve HorvathDepartment of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Beate RitzDepartment of Epidemiology, Fielding School of Public Health, University of California, Los Angeles, CA, USA.
University of California, Los Angeles · USHudsonAlpha Institute for Biotechnology · USStanford University · US

Funding

Center for Gene-Environment Studies in Parkinson DiseaseU54ES012078 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHESSELET, MARIE-FRANCOISE S · 2002 to 2006
$7.1M
The epiGenetIcs Leads to aGe-relAted diseases (GILGA-mesh) NetworkU34AG051425 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HORVATH, STEVE · 2015 to 2017
$954k
Environmental exposure, DNA methylation, and Parkinson's diseaseR21ES024356 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HORVATH, STEVE, RITZ, BEATE R. · 2014 to 2015
$424k
NHLBI NIH HHS HHSN268201600001CNHLBI NIH HHS HHSN268201600002CNHLBI NIH HHS HHSN268201600003CNHLBI NIH HHS HHSN268201600004CNHLBI NIH HHS HHSN268201600018CNIA NIH HHS U34 AG051425NIEHS NIH HHS R21 ES024356NIEHS NIH HHS U54 ES012078
6 · The paper itself

Abstract

Beneficial health effects have been attributed to coffee consumption, but it is not yet known whether epigenetics may have a role in this process. Here we associate epigenome-wide DNA methylation levels to habitual coffee consumption from two studies with blood (2100 and 215 participants), and one with saliva samples (256 participants). Adjusting for age, gender, and blood cell composition, one CpG (cg21566642 near ALPPL2) surpassed genome-wide significance (P=3.7 × 10

Indexed as

AdultAgedAged, 80 and overCoffeeCpG IslandsDNADNA MethylationFemaleHumansMaleMiddle AgedMulticenter Studies as TopicObservational Studies as TopicRandomized Controlled Trials as TopicSmokingTranscription FactorsCoffeeDNATranscription Factors

Identifiers

PMID28198392
PMCPMC5437893
OpenAlexW2588621673

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.