Evidence map›Paper›PMID 28196888›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Sulfide-responsive transcriptional repressor SqrR functions as a master regulator of sulfide-dependent photosynthesis.

Takayuki Shimizu, Jiangchuan Shen, Mingxu Fang, Yixiang Zhang, Koichi Hori, Jonathan C Trinidad, Carl E Bauer, David P Giedroc, Shinji Masuda

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 91 citations in OpenAlex.

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  12. TED: Enhancing Translation Efficiency in Bacterial Expression Systems.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  13. Review
  14. In the AlphaproteobacteriumAntioxidants (Basel, Switzerland) · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Takayuki ShimizuGraduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Kanagawa 226-8501, Japan.
Jiangchuan ShenDepartment of Chemistry, Indiana University, Bloomington, IN 47405-7102.
Mingxu FangDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405.
Yixiang ZhangDepartment of Chemistry, Indiana University, Bloomington, IN 47405-7102.
Koichi HoriSchool of Life Science and Technology, Tokyo Institute of Technology, Kanagawa 226-8501, Japan.
Jonathan C TrinidadDepartment of Chemistry, Indiana University, Bloomington, IN 47405-7102.
Carl E BauerDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405.
David P GiedrocDepartment of Chemistry, Indiana University, Bloomington, IN 47405-7102.
Shinji MasudaCenter for Biological Resources and Informatics, Tokyo Institute of Technology, Kanagawa 226-8501, Japan; shmasuda@bio.titech.ac.jp.ORCID 0000-0002-5349-4927
Indiana University Bloomington · USTokyo Institute of Technology · JP

Funding

Transition Metal Homeostasis and Reactive Sulfur Species in Bacterial PathogensR35GM118157 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI DAVID P. GIEDROC · 2016 to 2026
$5.9M
Prokaryotic gene regulation by light and oxygenR37GM040941 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BAUER, CARL EUGENE · 2006 to 2016
$5.4M
PROKARYOTIC GENE REGULATION BY LIGHT AND OXYGENR01GM040941 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BAUER, CARL EUGENE · 1994 to 2020
$3.3M
New mechanisms of sulfur sensing and trafficking in Staphylococcus aureus.R01GM097225 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI GIEDROC, DAVID P. · 2011 to 2014
$1.1M
NIGMS NIH HHS R01 GM040941NIGMS NIH HHS R01 GM097225NIGMS NIH HHS R35 GM118157NIGMS NIH HHS R37 GM040941
6 · The paper itself

Abstract

Sulfide was used as an electron donor early in the evolution of photosynthesis, with many extant photosynthetic bacteria still capable of using sulfur compounds such as hydrogen sulfide (H

Indexed as

ElectronsGene Expression Regulation, BacterialBase SequenceBinding SitesBiological EvolutionCysteineDisulfidesElectron TransportGlutathioneHydrogen SulfideOxidation-ReductionPhotosynthesisPromoter Regions, GeneticProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandCysteineDisulfidesGlutathioneglutathione persulfideHydrogen SulfideRepressor ProteinsSulfurphotosynthesis regulationpurple bacteriareactive sulfur speciesRhodobactersulfide sensor

Identifiers

PMID28196888
PMCPMC5338557
OpenAlexW2588354883

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.