Evidence map›Paper›PMID 28196600›Full record

ArticleCell stem cell2017

Genome Editing in hPSCs Reveals GATA6 Haploinsufficiency and a Genetic Interaction with GATA4 in Human Pancreatic Development.

Zhong-Dong Shi, Kihyun Lee, Dapeng Yang, Sadaf Amin, Nipun Verma, Qing V Li, Zengrong Zhu, Chew-Li Soh, Ritu Kumar, Todd Evans and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell stem cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 2 pooled it
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 2 syntheses or guidelines pooled it, 189 citations in OpenAlex.

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54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Zhong-Dong ShiDevelopmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA.
Kihyun LeeDevelopmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA; Weill Graduate School of Medical Sciences at Cornell University, 1300 York Avenue, New York, NY 10065, USA.
Dapeng YangDevelopmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA.
Sadaf AminWeill Graduate School of Medical Sciences at Cornell University, 1300 York Avenue, New York, NY 10065, USA.
Nipun VermaDevelopmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA; Tri-Institutional MD-PhD Program, Weill Graduate School of Medical Sciences at Cornell University, The Rockefeller University, Sloan Kettering Institute, 1300 York Avenue, New York, NY 10065, USA.
Qing V LiDevelopmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA; Louis V. Gerstner Jr. Graduate School of Biomedical Sciences, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, NY 10065, USA.
Zengrong ZhuDevelopmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA.
Chew-Li SohDevelopmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA.
Ritu KumarDepartment of Surgery, Weill Cornell Medical College, New York, NY 10065, USA.
Todd EvansDepartment of Surgery, Weill Cornell Medical College, New York, NY 10065, USA.
Shuibing ChenDepartment of Surgery, Weill Cornell Medical College, New York, NY 10065, USA. Electronic address: shc2034@med.cornell.edu.
Danwei HuangfuDevelopmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA. Electronic address: huangfud@mskcc.org.
Kettering University · USCornell University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Understanding Pancreatic Progenitors for Diabetes Cell-Replacement TherapyR01DK096239 · NIDDK · SLOAN-KETTERING INST CAN RESEARCH · PI HUANGFU, DANWEI · 2012 to 2021
$4.4M
Studying the Progression and Regression of Beta Cell Dysfunction in Type 2 DiabetDP2DK098093 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, SHUIBING · 2012 to 2017
$2.6M
Discovery of T1DM Associated Functional Variants in Human Pancreatic Beta Cell Development and SurvivalDP3DK111907 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, SHUIBING · 2016 to 2016
$2.0M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA008748NIDDK NIH HHS DP2 DK098093NIDDK NIH HHS DP3 DK111907NIDDK NIH HHS R01 DK096239
6 · The paper itself

Abstract

Human disease phenotypes associated with haploinsufficient gene requirements are often not recapitulated well in animal models. Here, we have investigated the association between human GATA6 haploinsufficiency and a wide range of clinical phenotypes that include neonatal and adult-onset diabetes using CRISPR (clustered regularly interspaced short palindromic repeat)/Cas9-mediated genome editing coupled with human pluripotent stem cell (hPSC) directed differentiation. We found that loss of one GATA6 allele specifically affects the differentiation of human pancreatic progenitors from the early PDX1+ stage to the more mature PDX1+NKX6.1+ stage, leading to impaired formation of glucose-responsive β-like cells. In addition to this GATA6 haploinsufficiency, we also identified dosage-sensitive requirements for GATA6 and GATA4 in the formation of both definitive endoderm and pancreatic progenitor cells. Our work expands the application of hPSCs from studying the impact of individual gene loci to investigation of multigenic human traits, and it establishes an approach for identifying genetic modifiers of human disease.

Indexed as

AnimalsCell DifferentiationCell LineFluorescent Antibody TechniqueGATA4 Transcription FactorGATA6 Transcription FactorGene EditingHaploinsufficiencyHumansMalePancreasPluripotent Stem CellsGATA4 protein, humanGATA4 Transcription FactorGATA6 protein, humanGATA6 Transcription FactorCRISPR/Cas9 genome editingdefinitive endodermGATA6 and GATA4genetic modifierhaploinsufficiencyhuman embryonic stem cellshuman pluripotent stem cells disease modelinginsulin producing pancreatic beta cellspancreatic agenesis and neonatal diabetespancreatic progenitor

Identifiers

PMID28196600
PMCPMC5419850
OpenAlexW2587217886

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.