Evidence map›Paper›PMID 28196526›Full record

ArticleBMC genomics2017

The genetic architecture of low-temperature adaptation in the wine yeast Saccharomyces cerevisiae.

Estéfani García-Ríos, Miguel Morard, Leopold Parts, Gianni Liti, José M Guillamón

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
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  6. Article
  7. A new cheese population inEvolutionary applications · 2023
    Article
  8. Genomic Adaptations ofMicroorganisms · 2022
    Review
  9. Truth in wine yeast.Microbial biotechnology · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Genome-Wide Transcriptional Changes ofFrontiers in microbiology · 2021
    Article
  15. Next Generation Winemakers: Genetic Engineering inBioengineering (Basel, Switzerland) · 2020
    Review
  16. Article
  17. Selection and subsequent physiological characterization of industrialBiotechnology reports (Amsterdam, Netherlands) · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Estéfani García-RíosDepartamento de Biotecnología de los alimentos, Instituto de Agroquímica y Tecnología de los Alimentos (CSIC), Avda. Agustín Escardino, 7, E-46980-Paterna, Valencia, Spain.
Miguel MorardDepartamento de Biotecnología de los alimentos, Instituto de Agroquímica y Tecnología de los Alimentos (CSIC), Avda. Agustín Escardino, 7, E-46980-Paterna, Valencia, Spain.
Leopold PartsEuropean Molecular Biology Laboratory, Meyerhofstrasse 1, Heidelberg, 69117, Germany.
Gianni LitiInstitute of Research on Cancer and Ageing of Nice (IRCAN), CNRS UMR 7284-INSERM U1081, Faculté de Médecine, Université de Nice Sophia Antipolis, Nice, France.
José M GuillamónDepartamento de Biotecnología de los alimentos, Instituto de Agroquímica y Tecnología de los Alimentos (CSIC), Avda. Agustín Escardino, 7, E-46980-Paterna, Valencia, Spain. guillamon@iata.csic.es.
Instituto de Agroquímica y Tecnología de Alimentos · ESEuropean Molecular Biology Laboratory · DEInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLow-temperature growth and fermentation of wine yeast can enhance wine aroma and make them highly desirable traits for the industry. Elucidating response to cold in Saccharomyces cerevisiae is, therefore, of paramount importance to select or genetically improve new wine strains. As most enological traits of industrial importance in yeasts, adaptation to low temperature is a polygenic trait regulated by many interacting loci.

resultsIn order to unravel the genetic determinants of low-temperature fermentation, we mapped quantitative trait loci (QTLs) by bulk segregant analyses in the F13 offspring of two Saccharomyces cerevisiae industrial strains with divergent performance at low temperature. We detected four genomic regions involved in the adaptation at low temperature, three of them located in the subtelomeric regions (chromosomes XIII, XV and XVI) and one in the chromosome XIV. The QTL analysis revealed that subtelomeric regions play a key role in defining individual variation, which emphasizes the importance of these regions' adaptive nature.

conclusionsThe reciprocal hemizygosity analysis (RHA), run to validate the genes involved in low-temperature fermentation, showed that genetic variation in mitochondrial proteins, maintenance of correct asymmetry and distribution of phospholipid in the plasma membrane are key determinants of low-temperature adaptation.

Indexed as

Cold TemperatureGene Expression Regulation, FungalAdaptation, PhysiologicalAllelesChromosome MappingEvolution, MolecularFermentationGene FrequencyGenetic Association StudiesGenome, FungalGenomicsGenotypePhenotypePhylogenyQuantitative Trait, HeritableQuantitative Trait LociCold adaptationIndustrial yeastLipid asymmetryQuantitative trait lociReciprocal hemizygosity analysisSubtelomeres

Identifiers

PMID28196526
PMCPMC5310122
OpenAlexW2587992888

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.