Evidence map›Paper›PMID 28196471›Full record

ArticleBMC genomics2017

Characterization and expression profiling of serine protease inhibitors in the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae).

Hailan Lin, Xijian Lin, Jiwei Zhu, Xiao-Qiang Yu, Xiaofeng Xia, Fengluan Yao, Guang Yang, Minsheng You

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. A Genome-Wide Analysis of Serine Protease Inhibitors inInternational journal of molecular sciences · 2023
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  6. The Chromosome-Level Genome Assembly of Bean Blossom Thrips (International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Hailan LinState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, and College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Xijian LinState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, and College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Jiwei ZhuState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, and College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Xiao-Qiang YuState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, and College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Xiaofeng XiaState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, and College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Fengluan YaoInstitute of Plant Protection, Fujian Academy of Agricultural Sciences, Fuzhou, 350013, China.
Guang YangState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, and College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Minsheng YouState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, and College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. msyou@iae.fjau.edu.cn.
Fujian Agriculture and Forestry University · CNMinistry of Agriculture · CAFujian Academy of Agricultural Sciences · CNUniversity of Missouri–Kansas City · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSerine protease inhibitors (SPIs) have been found in all living organisms and play significant roles in digestion, development and innate immunity. In this study, we present a genome-wide identification and expression profiling of SPI genes in the diamondback moth, Plutella xylostella (L.), a major pest of cruciferous crops with global distribution and broad resistance to different types of insecticides.

resultsA total of 61 potential SPI genes were identified in the P. xylostella genome, and these SPIs were classified into serpins, canonical inhibitors, and alpha-2-macroglobulins based on their modes of action. Sequence alignments showed that amino acid residues in the hinge region of known inhibitory serpins from other insect species were conserved in most P. xylostella serpins, suggesting that these P. xylostella serpins may be functionally active. Phylogenetic analysis confirmed that P. xylostella inhibitory serpins were clustered with known inhibitory serpins from six other insect species. More interestingly, nine serpins were highly similar to the orthologues in Manduca sexta which have been demonstrated to participate in regulating the prophenoloxidase activation cascade, an important innate immune response in insects. Of the 61 P.xylostella SPI genes, 33 were canonical SPIs containing seven types of inhibitor domains, including Kunitz, Kazal, TIL, amfpi, Antistasin, WAP and Pacifastin. Moreover, some SPIs contained additional non-inhibitor domains, including spondin_N, reeler, and other modules, which may be involved in protein-protein interactions. Gene expression profiling showed gene-differential, stage- and sex-specific expression patterns of SPIs, suggesting that SPIs may be involved in multiple physiological processes in P. xylostella.

conclusionsThis is the most comprehensive investigation so far on SPI genes in P. xylostella. The characterized features and expression patterns of P. xylostella SPIs indicate that the SPI family genes may be involved in innate immunity of this species. Our findings provide valuable information for uncovering further biological roles of SPI genes in P. xylostella.

Indexed as

Gene Expression ProfilingTranscriptomeAmino Acid SequenceAnimalsCluster AnalysisGene Expression RegulationGene Expression Regulation, DevelopmentalInsect ProteinsLife Cycle StagesMothsPhylogenySerine Proteinase InhibitorsSerpinsInsect ProteinsSerine Proteinase InhibitorsSerpinsCanonical inhibitorExpression patternLepidopteraPhylogenetic analysisSerpin

Identifiers

PMID28196471
PMCPMC5309989
OpenAlexW2587982190

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.