Evidence map›Paper›PMID 28195691›Full record

ArticleACS chemical biology2017

The GCaMP-R Family of Genetically Encoded Ratiometric Calcium Indicators.

Jung-Hwa Cho, Carter J Swanson, Jeannie Chen, Ang Li, Lisa G Lippert, Shannon E Boye, Kasey Rose, Sivaraj Sivaramakrishnan, Cheng-Ming Chuong, Robert H Chow

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 74 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. CaMK modulates sensory neural activity to control longevity and proteostasis.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  10. Neurovascular coupling and CONature communications · 2024
    Article
  11. Article
  12. Calcium imaging: a technique to monitor calcium dynamics in biological systems.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Review
  13. Article
  14. Review
  15. Ratiometric measurement of MAM CaNature communications · 2023
    Article
  16. Subcellular Imaging of Neuronal Calcium Handling In Vivo.Journal of visualized experiments : JoVE · 2023
    Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Carter J SwansonBiophysics Program, University of Michigan , 930 N. University, Room 4028, Ann Arbor, Michigan 48109, United States.ORCID 0000-0001-6697-9475
Jeannie Chen
Ang Li
Lisa G LippertDepartment of Genetics, Cell Biology & Development, University of Minnesota Twin Cities , 4-130 MCB, 420 Washington Avenue SE, Minneapolis, Minnesota 55455, United States.
Shannon E BoyeDepartment of Ophthalmology, University of Florida , 2000 SW Archer Rd, Rm R3-128, Gainesville, Florida 32611, United States.
Kasey Rose
Sivaraj SivaramakrishnanDepartment of Genetics, Cell Biology & Development, University of Minnesota Twin Cities , 4-130 MCB, 420 Washington Avenue SE, Minneapolis, Minnesota 55455, United States.
Cheng-Ming Chuong
Robert H ChowDepartment of Biomedical Engineering, Zilkha Neurogenetic Institute, University of Southern California , Room 323, Keck School of Medicine, Los Angeles, California 90089, United States.
University of Southern California · USUniversity of Minnesota · USUniversity of Florida · USUniversity of Michigan · US

Funding

Phototransduction in health and diseaseR01EY012155 · NEI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Jeannie Chen · 1998 to 2026
$11.8M
Size regulation of skin appendagesR01AR047364 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Cheng-Ming Chuong · 2002 to 2026
$10.1M
Engineering AAV for safe and efficient gene delivery to the human retinaR01EY024280 · NEI · UNIVERSITY OF FLORIDA · PI Shannon Elizabeth Boye · 2014 to 2026
$7.5M
LIW5R01AR042177 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHUONG, CHENG-MING · 1995 to 2013
$5.7M
Tissue Engineering of New Hair FormationR01AR060306 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHUONG, CHENG-MING · 2010 to 2019
$4.6M
Experimental and Clinical Investigations of Retinal StimulationR01EY022931 · NEI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI WEILAND, JAMES D. · 2013 to 2017
$4.5M
Tissue Patterning in living skin and organ explantsR37AR060306 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Cheng-Ming Chuong · 2020 to 2026
$3.6M
Analyses of retinal circuits after rod rescue in a mouse model of human blindnessR01EY027193 · NEI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, JEANNIE, FIELD, GREGORY DARIN · 2016 to 2020
$2.7M
The kinase toolbox: Mapping the spatial and temporal regulation of cell signalingDP2CA186752 · NCI · UNIVERSITY OF MINNESOTA · PI SIVARAMAKRISHNAN, SIVARAJ · 2013 to 2013
$2.3M
MOLECULAR CONTROL OF REGULATED EXOCYTOSISR01GM085791 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHOW, ROBERT HSIU-PING · 2008 to 2011
$1.5M
NCI NIH HHS DP2 CA186752NEI NIH HHS R01 EY012155NEI NIH HHS R01 EY022931NEI NIH HHS R01 EY024280NEI NIH HHS R01 EY027193NIAMS NIH HHS R01 AR042177NIAMS NIH HHS R01 AR047364NIAMS NIH HHS R01 AR060306NIAMS NIH HHS R37 AR060306NIGMS NIH HHS R01 GM085791
6 · The paper itself

Abstract

We report on GCaMP-Rs, a new family of genetically encoded ratiometric calcium indicators that extend the virtues of the GCaMP proteins to ratiometric measurements. We have engineered a tandem construct of calcium-dependent GCaMP and calcium-independent mCherry fluorescent proteins. The tandem design assures that the two proteins localize in the same cellular compartment(s) and facilitates pixelwise ratiometric measurements; however, Förster resonance energy transfer (FRET) between the fluorophores reduces brightness of the sensor by up to half (depending on the GCaMP variant). To eliminate FRET, we introduced a rigid α-helix, the ER/K helix, between GCaMP and mCherry. Avoiding FRET significantly increases the brightness (notably, even at low calcium concentrations), the signal-to-noise ratio, and the dynamic range.

Indexed as

AnimalsCalciumCalibrationChickensFluorescence Resonance Energy TransferHEK293 CellsHumansKineticsLuminescent ProteinsRed Fluorescent ProteinCalciumLuminescent ProteinsRed Fluorescent Protein

Identifiers

PMID28195691
PMCPMC5572679
OpenAlexW2588522258

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.