Evidence map›Paper›PMID 28195573›Full record

ArticleTranslational psychiatry2017

Whole-exome sequencing of individuals from an isolated population implicates rare risk variants in bipolar disorder.

F Lescai, T D Als, Q Li, M Nyegaard, G Andorsdottir, M Biskopstø, A Hedemand, A Fiorentino, N O'Brien, A Jarram and 12 more

Open access · goldAbstract read
In one paragraph

Article in Translational psychiatry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Bipolar Disorder.Current opinion in neurobiology · 2023
    Review
  5. Article
  6. dbBIP: a comprehensive bipolar disorder database for genetic research.Database : the journal of biological databases and curation · 2022
    Article
  7. Review
  8. HeterozygousGenes · 2021
    Article
  9. Emerging perspectives on multidomain phosphatidylinositol transfer proteins.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 4 countries.

F LescaiDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID 0000-0002-6399-9101
T D AlsDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
Q LiBGI-Shenzhen, Shenzhen, China.ORCID 0000-0003-1567-2240
M NyegaardDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID 0000-0003-4973-8543
G AndorsdottirGenetic Biobank of the Faroe Islands, Tórshavn, Faroe Islands.
M BiskopstøGenetic Biobank of the Faroe Islands, Tórshavn, Faroe Islands.
A HedemandDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
A FiorentinoDivision of Psychiatry, University College London, London, UK.
N O'BrienDivision of Psychiatry, University College London, London, UK.
A JarramDivision of Psychiatry, University College London, London, UK.
J LiangBGI-Shenzhen, Shenzhen, China.
J GroveDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID 0000-0003-2284-5744
J PallesenDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
E EickhardtDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.ORCID 0000-0002-5358-1318
M MattheisenDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
L BolundDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
D DemontisDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
A G WangMental Health Centre Amager, Copenhagen, Denmark.
A McQuillinBGI-Shenzhen, Shenzhen, China.
O MorsiPSYCH-The Lundbeck Foundation Initiative for Integrative Psychiatric Research, Aarhus, Denmark.
J WangiSEQ-Centre for Integrative Sequencing, Aarhus University, Aarhus, Denmark.
A D BørglumDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
Aarhus University · DKBGI Group (China) · CNUniversity College London · GBUniversity of the Faroe Islands · FO

Funding

Medical Research Council G0500791Medical Research Council G0701007Medical Research Council G1000708
6 · The paper itself

Abstract

Bipolar disorder affects about 1% of the world's population, and its estimated heritability is about 75%. Only few whole genome or whole-exome sequencing studies in bipolar disorder have been reported, and no rare coding variants have yet been robustly identified. The use of isolated populations might help finding variants with a recent origin, more likely to have drifted to higher frequency by chance. Following this approach, we investigated 28 bipolar cases and 214 controls from the Faroe Islands by whole exome sequencing, and the results were followed-up in a British sample of 2025 cases and 1358 controls. Seventeen variants in 16 genes in the single-variant analysis, and 3 genes in the gene-based statistics surpassed exome-wide significance in the discovery phase. The discovery findings were supported by enrichment analysis of common variants from genome-wide association studies (GWAS) data and interrogation of protein-protein interaction networks. The replication in the British sample confirmed the association with NOS1 (missense variant rs79487279) and NCL (gene-based test). A number of variants from the discovery set were not present in the replication sample, including a novel PITPNM2 missense variant, which is located in a highly significant schizophrenia GWAS locus. Likewise, PIK3C2A identified in the gene-based analysis is located in a combined bipolar and schizophrenia GWAS locus. Our results show support both for existing findings in the literature, as well as for new risk genes, and identify rare variants that might provide additional information on the underlying biology of bipolar disorder.

Indexed as

Bipolar DisorderCalcium-Binding ProteinsCase-Control StudiesDenmarkGene Regulatory NetworksGenetic Predisposition to DiseaseHumansMembrane ProteinsMembrane Transport ProteinsMutation, MissenseNitric Oxide Synthase Type INucleolinPhosphatidylinositol 3-KinasesPhosphoproteinsPolymorphism, GeneticRNA-Binding ProteinsCalcium-Binding ProteinsMembrane ProteinsMembrane Transport ProteinsNitric Oxide Synthase Type INOS1 protein, humanNucleolinPhosphatidylinositol 3-KinasesPhosphoproteinsPIK3C2A protein, humanPITPNM2 protein, humanRNA-Binding Proteins

Identifiers

PMID28195573
PMCPMC5438033
OpenAlexW2587901680

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.