Evidence map›Paper›PMID 28195122›Full record

ArticleNature communications2017

Integrated genomic analyses of de novo pathways underlying atypical meningiomas.

Akdes Serin Harmancı, Mark W Youngblood, Victoria E Clark, Süleyman Coşkun, Octavian Henegariu, Daniel Duran, E Zeynep Erson-Omay, Leon D Kaulen, Tong Ihn Lee, Brian J Abraham and 17 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 120 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed, 2 pooled it
14.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 2 syntheses or guidelines pooled it, 211 citations in OpenAlex.

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60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 5 institutions in 2 countries.

Akdes Serin HarmancıYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Mark W YoungbloodYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Victoria E ClarkYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Süleyman CoşkunYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Octavian HenegariuYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Daniel DuranYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.ORCID 0000-0001-6888-252X
E Zeynep Erson-OmayYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Leon D KaulenYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Tong Ihn LeeWhitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, Massachusetts 02142, USA.
Brian J AbrahamWhitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, Massachusetts 02142, USA.
Matthias SimonDepartment of Neurosurgery, University of Bonn Medical School, Bonn 53105, Germany.
Boris KrischekDepartment of General Neurosurgery, University Hospital of Cologne, Cologne 50937, Germany.
Marco TimmerDepartment of General Neurosurgery, University Hospital of Cologne, Cologne 50937, Germany.
Roland GoldbrunnerDepartment of General Neurosurgery, University Hospital of Cologne, Cologne 50937, Germany.
S Bülent OmayYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Jacob BaranoskiYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Burçin BaranYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Geneive Carrión-GrantYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Hanwen BaiYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.ORCID 0000-0002-8473-5279
Ketu Mishra-GorurYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Johannes SchrammDepartment of Neurosurgery, University of Bonn Medical School, Bonn 53105, Germany.
Jennifer MoliternoYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Alexander O VortmeyerDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Kaya BilgüvarYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Katsuhito YasunoYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.ORCID 0000-0002-3606-532X
Richard A YoungWhitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, Massachusetts 02142, USA.ORCID 0000-0001-8855-8647
Murat GünelYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut 06510, USA.
Yale Cancer Center · USUniversity Hospital Cologne · DEWhitehead Institute for Biomedical Research · USUniversity of Bonn · DEYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Transcriptional Regulatory Networks in Living CellsR01HG002668 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI YOUNG, RICHARD · 2003 to 2016
$17.9M
NRSA Training CoreTL1TR001864 · NCATS · YALE UNIVERSITY · PI CANTLEY, LLOYD G, EDELMAN, E. JENNIFER · 2016 to 2025
$9.9M
NCATS NIH HHS TL1 TR001864NCATS NIH HHS UL1 TR001863NHGRI NIH HHS R01 HG002668NIGMS NIH HHS T32 GM007205
6 · The paper itself

Abstract

Meningiomas are mostly benign brain tumours, with a potential for becoming atypical or malignant. On the basis of comprehensive genomic, transcriptomic and epigenomic analyses, we compared benign meningiomas to atypical ones. Here, we show that the majority of primary (de novo) atypical meningiomas display loss of NF2, which co-occurs either with genomic instability or recurrent SMARCB1 mutations. These tumours harbour increased H3K27me3 signal and a hypermethylated phenotype, mainly occupying the polycomb repressive complex 2 (PRC2) binding sites in human embryonic stem cells, thereby phenocopying a more primitive cellular state. Consistent with this observation, atypical meningiomas exhibit upregulation of EZH2, the catalytic subunit of the PRC2 complex, as well as the E2F2 and FOXM1 transcriptional networks. Importantly, these primary atypical meningiomas do not harbour TERT promoter mutations, which have been reported in atypical tumours that progressed from benign ones. Our results establish the genomic landscape of primary atypical meningiomas and potential therapeutic targets.

Indexed as

GenomeBinding SitesBrain NeoplasmsCell Transformation, NeoplasticChromosomal InstabilityCluster AnalysisDNA MethylationE2F2 Transcription FactorEnhancer of Zeste Homolog 2 ProteinEpigenomicsExomeForkhead Box Protein M1Gene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksGene SilencingE2F2 protein, humanE2F2 Transcription FactorEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanForkhead Box Protein M1FOXM1 protein, humanJumonji Domain-Containing Histone DemethylasesPolycomb Repressive Complex 2RNA, MessengerSMARCB1 ProteinSMARCB1 protein, human

Identifiers

PMID28195122
PMCPMC5316884
OpenAlexW2588593526

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.