Evidence map›Paper›PMID 28193894›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Rules of RNA specificity of hnRNP A1 revealed by global and quantitative analysis of its affinity distribution.

Niyati Jain, Hsuan-Chun Lin, Christopher E Morgan, Michael E Harris, Blanton S Tolbert

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

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  18. Optimization of RiPCA for the Live-Cell Detection of Pre-MicroRNA-Protein Interactions.Chembiochem : a European journal of chemical biology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Niyati JainDepartment of Chemistry, Case Western Reserve University, Cleveland, OH 44106.
Hsuan-Chun LinDepartment of Biochemistry, Case Western Reserve University School of Medicine, Cleveland, OH 44106.
Christopher E MorganDepartment of Chemistry, Case Western Reserve University, Cleveland, OH 44106.
Michael E HarrisDepartment of Biochemistry, Case Western Reserve University School of Medicine, Cleveland, OH 44106 blanton.tolbert@case.edu michael.e.harris@case.edu.
Blanton S TolbertDepartment of Chemistry, Case Western Reserve University, Cleveland, OH 44106; blanton.tolbert@case.edu michael.e.harris@case.edu.

Funding

The Center for HIV RNA Studies (CRNA)P50GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAYIE, KWAKU · 2012 to 2016
$21.7M
STRUCTURE/FUNCTION OF RIBONUCLEASE PR01GM056740 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HARRIS, MICHAEL E. · 1998 to 2015
$4.8M
STRUCTURAL BIOPHYSICS OF HIV ALTERNATIVE SPLICINGR01GM101979 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI TOLBERT, BLANTON SMITH · 2012 to 2016
$1.6M
NIGMS NIH HHS P50 GM103297NIGMS NIH HHS R01 GM056740NIGMS NIH HHS R01 GM101979
6 · The paper itself

Abstract

Heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) is a multipurpose RNA-binding protein (RBP) involved in normal and pathological RNA metabolism. Transcriptome-wide mapping and in vitro evolution identify consensus hnRNP A1 binding motifs; however, such data do not reveal how surrounding RNA sequence and structural context modulate affinity. We determined the affinity of hnRNP A1 for all possible sequence variants (

Indexed as

Alternative SplicingProtein Interaction Domains and MotifsBase PairingBase SequenceBinding SitesExonsHeterogeneous Nuclear Ribonucleoprotein A1HIVHumansIntronsKineticsModels, MolecularNucleic Acid ConformationProtein BindingRNA, ViralThermodynamicsHeterogeneous Nuclear Ribonucleoprotein A1RNA, Viralbinding kineticshnRNP A1protein–RNA specificityRNA structurethermodynamics

Identifiers

PMID28193894
PMCPMC5338530

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.