Evidence map›Paper›PMID 28193168›Full record

ArticleBMC plant biology2017

Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.).

Yu Ma, Clarice J Coyne, Michael A Grusak, Michael Mazourek, Peng Cheng, Dorrie Main, Rebecca J McGee

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
15.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 90 citations in OpenAlex.

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  6. Exploring novel SNPs and candidate genes associated with seed allometry inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
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  14. Applications of Genomic Tools in Plant Breeding: Crop Biofortification.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Yu MaDepartment of Horticulture, Washington State University, Pullman, WA, USA.
Clarice J CoyneUSDA-ARS Plant Germplasm Introduction and Testing, Pullman, WA, USA.
Michael A GrusakUSDA-ARS Children's Nutrition Research Center, Houston, TX, USA.
Michael MazourekDepartment of Plant Breeding and Genetics, Cornell University, Ithaca, NY, USA.
Peng ChengDepartment of Plant Sciences, University of Missouri, Columbia, MO, USA.
Dorrie MainDepartment of Horticulture, Washington State University, Pullman, WA, USA.
Rebecca J McGeeUSDA-ARS Grain Legume Genetics and Physiology Research, Pullman, WA, USA. rebecca.mcgee@ARS.USDA.GOV.
Washington State University · USChildren's Nutrition Research Center at Baylor College of Medicine · USCornell University · USUniversity of Missouri · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMarker-assisted breeding is now routinely used in major crops to facilitate more efficient cultivar improvement. This has been significantly enabled by the use of next-generation sequencing technology to identify loci and markers associated with traits of interest. While rich in a range of nutritional components, such as protein, mineral nutrients, carbohydrates and several vitamins, pea (Pisum sativum L.), one of the oldest domesticated crops in the world, remains behind many other crops in the availability of genomic and genetic resources. To further improve mineral nutrient levels in pea seeds requires the development of genome-wide tools. The objectives of this research were to develop these tools by: identifying genome-wide single nucleotide polymorphisms (SNPs) using genotyping by sequencing (GBS); constructing a high-density linkage map and comparative maps with other legumes, and identifying quantitative trait loci (QTL) for levels of boron, calcium, iron, potassium, magnesium, manganese, molybdenum, phosphorous, sulfur, and zinc in the seed, as well as for seed weight.

resultsIn this study, 1609 high quality SNPs were found to be polymorphic between 'Kiflica' and 'Aragorn', two parents of an F

conclusionThe genome-wide SNPs and the genetic linkage map developed in this study permitted QTL identification for pea seed mineral nutrients that will serve as important resources to enable marker-assisted selection (MAS) for nutritional quality traits in pea breeding programs.

Indexed as

Polymorphism, Single NucleotideQuantitative Trait LociChromosome MappingGenome-Wide Association StudyMineralsPisum sativumSeedsMineralsComparative analysisLinkage mapMineral nutrientsPeaQTLSNP

Identifiers

PMID28193168
PMCPMC5307697
OpenAlexW2588571033

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.