Evidence map›Paper›PMID 28192233›Full record

ArticleJournal of biomedical informatics2017

Use of ontology structure and Bayesian models to aid the crowdsourcing of ICD-11 sanctioning rules.

Yun Lou, Samson W Tu, Csongor Nyulas, Tania Tudorache, Robert J G Chalmers, Mark A Musen

Open access · greenAbstract read
In one paragraph

Article in Journal of biomedical informatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yun LouStanford University, Stanford, CA, USA.
Samson W TuStanford University, Stanford, CA, USA. Electronic address: swt@stanford.edu.
Csongor NyulasStanford University, Stanford, CA, USA.
Tania TudoracheStanford University, Stanford, CA, USA.
Robert J G ChalmersUniversity of Manchester, Manchester, UK.
Mark A MusenStanford University, Stanford, CA, USA.
Stanford University · USStanford Medicine · USUniversity of Manchester · GB

Funding

Collaborative Development of Biomedical Ontologies and TerminologiesR01GM086587 · NIGMS · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2009 to 2016
$4.1M
Protege: A Knowledge-Engineering Environment for Advancing Biomedical SciencesR01GM121724 · NIGMS · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2017 to 2020
$2.3M
Protege: An Ontology-Development Platform for Biomedical ScientistsR01GM103316 · NIGMS · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2013 to 2016
$2.1M
NIGMS NIH HHS R01 GM086587NIGMS NIH HHS R01 GM103316NIGMS NIH HHS R01 GM121724
6 · The paper itself

Abstract

The International Classification of Diseases (ICD) is the de facto standard international classification for mortality reporting and for many epidemiological, clinical, and financial use cases. The next version of ICD, ICD-11, will be submitted for approval by the World Health Assembly in 2018. Unlike previous versions of ICD, where coders mostly select single codes from pre-enumerated disease and disorder codes, ICD-11 coding will allow extensive use of multiple codes to give more detailed disease descriptions. For example, "severe malignant neoplasms of left breast" may be coded using the combination of a "stem code" (e.g., code for malignant neoplasms of breast) with a variety of "extension codes" (e.g., codes for laterality and severity). The use of multiple codes (a process called post-coordination), while avoiding the pitfall of having to pre-enumerate vast number of possible disease and qualifier combinations, risks the creation of meaningless expressions that combine stem codes with inappropriate qualifiers. To prevent that from happening, "sanctioning rules" that define legal combinations are necessary. In this work, we developed a crowdsourcing method for obtaining sanctioning rules for the post-coordination of concepts in ICD-11. Our method utilized the hierarchical structures in the domain to improve the accuracy of the sanctioning rules and to lower the crowdsourcing cost. We used Bayesian networks to model crowd workers' skills, the accuracy of their responses, and our confidence in the acquired sanctioning rules. We applied reinforcement learning to develop an agent that constantly adjusted the confidence cutoffs during the crowdsourcing process to maximize the overall quality of sanctioning rules under a fixed budget. Finally, we performed formative evaluations using a skin-disease branch of the draft ICD-11 and demonstrated that the crowd-sourced sanctioning rules replicated those defined by an expert dermatologist with high precision and recall. This work demonstrated that a crowdsourcing approach could offer a reasonably efficient method for generating a first draft of sanctioning rules that subject matter experts could verify and edit, thus relieving them of the tedium and cost of formulating the initial set of rules.

Indexed as

Bayes TheoremCrowdsourcingInternational Classification of DiseasesHumansNeoplasmsBayesian networkCrowdsourcingICDOntologyPost-coordinationSanctioning rules

Identifiers

PMID28192233
PMCPMC5428551
OpenAlexW2586809425

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.