Evidence map›Paper›PMID 28191883›Full record

ArticleNature microbiology2017

LoaP is a broadly conserved antiterminator protein that regulates antibiotic gene clusters in Bacillus amyloliquefaciens.

Jonathan R Goodson, Steven Klupt, Chengxi Zhang, Paul Straight, Wade C Winkler

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 55 citations in OpenAlex.

  1. Research square · 2026
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  2. bioRxiv : the preprint server for biology · 2026
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  3. mBio · 2025
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  6. Robust regulation of transcription pausing inProceedings of the National Academy of Sciences of the United States of America · 2023
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  8. Biocontrol of citrus bacterial canker caused bySaudi journal of biological sciences · 2022
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  9. Resistance to Antimalarial Monotherapy Is Cyclic.Journal of clinical medicine · 2022
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  10. Regulation of Heterogenous LexA Expression inInternational journal of molecular sciences · 2022
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  11. Review
  12. Micellar Antibiotics ofPharmaceutics · 2021
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  17. Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jonathan R GoodsonDepartment of Cell Biology and Molecular Genetics, The University of Maryland, 3112 Biosciences Research Building, College Park, Maryland 20742, USA.
Steven KluptDepartment of Cell Biology and Molecular Genetics, The University of Maryland, 3112 Biosciences Research Building, College Park, Maryland 20742, USA.
Chengxi ZhangDepartment of Biochemistry and Biophysics, Texas A&M University, TAMU 2128 - Rm 435, College Station, Texas 77843, USA.
Paul StraightDepartment of Biochemistry and Biophysics, Texas A&M University, TAMU 2128 - Rm 435, College Station, Texas 77843, USA.
Wade C WinklerDepartment of Cell Biology and Molecular Genetics, The University of Maryland, 3112 Biosciences Research Building, College Park, Maryland 20742, USA.
University of Maryland, College Park · USTexas A&M University · US

Funding

Training in Host-pathogens interactionsT32AI089621 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI LEE, VINCENT T, MCIVER, KEVIN S. · 2010 to 2025
$2.1M
NIAID NIH HHS T32 AI089621
6 · The paper itself

Abstract

A valuable resource available in the search for new natural products is the diverse microbial life that spans the planet. A large subset of these microorganisms synthesize complex specialized metabolites exhibiting biomedically important activities. A limiting step to the characterization of these compounds is an elucidation of the genetic regulatory mechanisms that oversee their production. Although proteins that control transcription initiation of specialized metabolite gene clusters have been identified, those affecting transcription elongation have not been broadly investigated. In this study, we analysed the phylogenetic distribution of the large, widespread NusG family of transcription elongation proteins and found that it includes a cohesive outgroup of paralogues (herein coined LoaP), which are often positioned adjacent or within gene clusters for specialized metabolites. We established Bacillus amyloliquefaciens LoaP as a paradigm for this protein subgroup and showed that it regulated the transcriptional readthrough of termination sites located within two different antibiotic biosynthesis operons. Both of these antibiotics have been implicated in plant-protective activities, demonstrating that LoaP controls an important regulon of specialized metabolite genes for this microorganism. These data therefore reveal transcription elongation as a point of regulatory control for specialized metabolite pathways and introduce a subgroup of NusG proteins for this purpose.

Indexed as

Gene Expression Regulation, BacterialTranscription Elongation, GeneticAnti-Bacterial AgentsBacillus amyloliquefaciensBacterial ProteinsLactonesMetabolic Networks and PathwaysMultigene FamilyOperonPhylogenyPolyketide SynthasesRegulonRNA-Binding ProteinsTranscription FactorsTranscription Termination, GeneticAnti-Bacterial Agentsantiterminator proteins, BacteriaBacterial ProteinsdifficidinLactonesPolyketide SynthasesRNA-Binding ProteinsTranscription Factors

Identifiers

PMID28191883
PMCPMC5913657
OpenAlexW2589063341

What OpenQuestion holds

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LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.