Evidence map›Paper›PMID 28191459›Full record

ArticleBioMed research international2017

Epidermal Growth Factor Signaling towards Proliferation: Modeling and Logic Inference Using Forward and Backward Search.

Adrián Riesco, Beatriz Santos-Buitrago, Javier De Las Rivas, Merrill Knapp, Gustavo Santos-García, Carolyn Talcott

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Metabolic Shades of S-D-Lactoylglutathione.Antioxidants (Basel, Switzerland) · 2022
    Review
  5. Article
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Adrián RiescoUniversidad Complutense de Madrid, Madrid, Spain.
Beatriz Santos-BuitragoBio and Health Informatics Lab, Seoul National University, Seoul, Republic of Korea.
Javier De Las RivasCancer Research Center (CSIC/USAL) and IBSAL, Salamanca, Spain.
Merrill KnappBiosciences Division, SRI International, Menlo Park, CA, USA.
Gustavo Santos-GarcíaUniversity of Salamanca, Salamanca, Spain.ORCID 0000-0001-6609-5493
Carolyn TalcottComputer Science Laboratory, SRI International, Menlo Park, CA, USA.
SRI International · USInstituto de Investigación Biomédica de Salamanca · ESSeoul National University · KRUniversidad Complutense de Madrid · ESUniversidad de Salamanca · ES

Funding

Systems-Based Predictions of Responses to Cancer TherapyU54CA112970 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI MILLS, GORDON B. · 2004 to 2014
$27.1M
FORMAL METHODS APPLIED TO BIOLOGICAL SIGNALING NETWORKSR33GM068146 · NIGMS · SRI INTERNATIONAL · PI LADEROUTE, KEITH R. · 2005 to 2006
$777k
FORMAL METHODS APPLIED TO BIOLOGICAL SIGNALING NETWORKSR21GM068146 · NIGMS · SRI INTERNATIONAL · PI LADEROUTE, KEITH R. · 2004 to 2004
$187k
NCI NIH HHS U54 CA112970NIGMS NIH HHS R21 GM068146NIGMS NIH HHS R33 GM068146
6 · The paper itself

Abstract

In biological systems, pathways define complex interaction networks where multiple molecular elements are involved in a series of controlled reactions producing responses to specific biomolecular signals. These biosystems are dynamic and there is a need for mathematical and computational methods able to analyze the symbolic elements and the interactions between them and produce adequate readouts of such systems. In this work, we use rewriting logic to analyze the cellular signaling of epidermal growth factor (EGF) and its cell surface receptor (EGFR) in order to induce cellular proliferation. Signaling is initiated by binding the ligand protein EGF to the membrane-bound receptor EGFR so as to trigger a reactions path which have several linked elements through the cell from the membrane till the nucleus. We present two different types of search for analyzing the EGF/proliferation system with the help of Pathway Logic tool, which provides a knowledge-based development environment to carry out the modeling of the signaling. The first one is a standard (forward) search. The second one is a novel approach based on

Indexed as

LogicModels, BiologicalSignal TransductionCell ProliferationEpidermal Growth FactorErbB ReceptorsHumansEpidermal Growth FactorErbB Receptors

Identifiers

PMID28191459
PMCPMC5278199
OpenAlexW2572251957

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.