Evidence map›Paper›PMID 28190401›Full record

ArticleGenome biology2017

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species.

Thomas C Mathers, Yazhou Chen, Gemy Kaithakottil, Fabrice Legeai, Sam T Mugford, Patrice Baa-Puyoulet, Anthony Bretaudeau, Bernardo Clavijo, Stefano Colella, Olivier Collin and 26 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Genome biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
55.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 837 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Transcriptome analysis and characterization of cathepsin B-like protein inMolecular breeding : new strategies in plant improvement · 2026
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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

36 authors at 16 institutions in 4 countries.

Thomas C MathersEarlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
Yazhou ChenJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Gemy KaithakottilEarlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
Fabrice LegeaiThe International Aphid Genomics Consortium, Miami, USA.
Sam T MugfordJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Patrice Baa-PuyouletThe International Aphid Genomics Consortium, Miami, USA.
Anthony BretaudeauThe International Aphid Genomics Consortium, Miami, USA.
Bernardo ClavijoEarlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
Stefano ColellaThe International Aphid Genomics Consortium, Miami, USA.
Olivier CollinIRISA/INRIA, GenOuest Core Facility, Campus de Beaulieu, Rennes, 35042, France.
Tamas DalmaySchool of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Thomas DerrienCNRS, UMR 6290, Institut de Génétique et Developpement de Rennes, Université de Rennes 1, 2 Avenue du Pr. Léon Bernard, 35000, Rennes, France.
Honglin FengThe International Aphid Genomics Consortium, Miami, USA.
Toni GabaldónThe International Aphid Genomics Consortium, Miami, USA.
Anna JordanJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Irene JulcaThe International Aphid Genomics Consortium, Miami, USA.
Graeme J KettlesJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Krissana KowitwanichJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Dominique LavenierIRISA/INRIA, GenOuest Core Facility, Campus de Beaulieu, Rennes, 35042, France.
Paolo LenziJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Sara Lopez-GomollonSchool of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Damian LoskaThe International Aphid Genomics Consortium, Miami, USA.
Daniel MaplesonEarlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
Florian MaumusThe International Aphid Genomics Consortium, Miami, USA.
Simon MoxonEarlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
Daniel R G PriceThe International Aphid Genomics Consortium, Miami, USA.
Akiko SugioJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Manuella van MunsterThe International Aphid Genomics Consortium, Miami, USA.
Marilyne UzestThe International Aphid Genomics Consortium, Miami, USA.
Darren WaiteEarlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
Georg JanderThe International Aphid Genomics Consortium, Miami, USA.
Denis TaguThe International Aphid Genomics Consortium, Miami, USA.
Alex C C WilsonThe International Aphid Genomics Consortium, Miami, USA.
Cock van OosterhoutThe International Aphid Genomics Consortium, Miami, USA.
David SwarbreckEarlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK. david.swarbreck@earlham.ac.uk.
Saskia A HogenhoutJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK. saskia.hogenhout@jic.ac.uk.
Norwich Research Park · GBInstitut de Génétique, Environnement et Protection des Plantes · FRUniversity of Miami · USCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FREarlham Institute · GBInstitut de Recherche en Informatique et Systèmes Aléatoires · FRJohn Innes Centre · GBUniversitat Pompeu Fabra · ESCambridge University Press · GBCentre for Genomic Regulation · ESInstitut de génétique et de développement de Rennes · FRInstitut national de recherche en sciences et technologies du numérique · FRInstitut National des Sciences Appliquées de Lyon · FRIthaca College · USUniversité Claude Bernard Lyon 1 · FRUniversité Paris-Saclay · FR

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/000C0623
6 · The paper itself

Abstract

backgroundThe prevailing paradigm of host-parasite evolution is that arms races lead to increasing specialisation via genetic adaptation. Insect herbivores are no exception and the majority have evolved to colonise a small number of closely related host species. Remarkably, the green peach aphid, Myzus persicae, colonises plant species across 40 families and single M. persicae clonal lineages can colonise distantly related plants. This remarkable ability makes M. persicae a highly destructive pest of many important crop species.

resultsTo investigate the exceptional phenotypic plasticity of M. persicae, we sequenced the M. persicae genome and assessed how one clonal lineage responds to host plant species of different families. We show that genetically identical individuals are able to colonise distantly related host species through the differential regulation of genes belonging to aphid-expanded gene families. Multigene clusters collectively upregulate in single aphids within two days upon host switch. Furthermore, we demonstrate the functional significance of this rapid transcriptional change using RNA interference (RNAi)-mediated knock-down of genes belonging to the cathepsin B gene family. Knock-down of cathepsin B genes reduced aphid fitness, but only on the host that induced upregulation of these genes.

conclusionsPrevious research has focused on the role of genetic adaptation of parasites to their hosts. Here we show that the generalist aphid pest M. persicae is able to colonise diverse host plant species in the absence of genetic specialisation. This is achieved through rapid transcriptional plasticity of genes that have duplicated during aphid evolution.

Indexed as

Gene duplicationGenome sequenceHemipteraMyzus persicaeParasitePlasticityRNA interference (RNAi)Sap-feeding insectsTranscriptome

Identifiers

PMID28190401
PMCPMC5304397
OpenAlexW2587454003

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.