Evidence map›Paper›PMID 28188619›Full record

ArticleThe Journal of pathology2017

Generation of conditional oncogenic chromosomal translocations using CRISPR-Cas9 genomic editing and homology-directed repair.

Lee Spraggon, Luciano G Martelotto, Julija Hmeljak, Tyler D Hitchman, Jiang Wang, Lu Wang, Emily K Slotkin, Pang-Dian Fan, Jorge S Reis-Filho, Marc Ladanyi

Open access · greenAbstract read
In one paragraph

Article in The Journal of pathology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Review
  3. Small round cell sarcomas.Nature reviews. Disease primers · 2022
    Review
  4. Review
  5. CRISPR in cancer biology and therapy.Nature reviews. Cancer · 2022
    Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. Acquired BRAF Rearrangements Induce Secondary Resistance to EGFR therapy in EGFR-Mutated Lung Cancers.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2019
    Article
  14. Translocation-Related Sarcomas.International journal of molecular sciences · 2018
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. CRISPR-Cas9-guided oncogenic chromosomal translocations with conditional fusion protein expression in human mesenchymal cells.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Lee SpraggonDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-3438-4180
Luciano G MartelottoDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Julija HmeljakDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Tyler D HitchmanDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Jiang WangDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Lu WangDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Emily K SlotkinDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Pang-Dian FanDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Jorge S Reis-FilhoDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Marc LadanyiDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

Chromosomal rearrangements encoding oncogenic fusion proteins are found in a wide variety of malignancies. The use of programmable nucleases to generate specific double-strand breaks in endogenous loci, followed by non-homologous end joining DNA repair, has allowed several of these translocations to be generated as constitutively expressed fusion genes within a cell population. Here, we describe a novel approach that combines CRISPR-Cas9 technology with homology-directed repair to engineer, capture, and modulate the expression of chromosomal translocation products in a human cell line. We have applied this approach to the genetic modelling of t(11;22)(q24;q12) and t(11;22)(p13;q12), translocation products of the EWSR1 gene and its 3' fusion partners FLI1 and WT1, present in Ewing's sarcoma and desmoplastic small round cell tumour, respectively. Our innovative approach allows for temporal control of the expression of engineered endogenous chromosomal rearrangements, and provides a means to generate models to study tumours driven by fusion genes. Copyright © 2017 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

Indexed as

Translocation, GeneticArtificial Gene FusionChromosomes, Human, Pair 11Chromosomes, Human, Pair 22Clustered Regularly Interspaced Short Palindromic RepeatsDesmoplastic Small Round Cell TumorDNA, NeoplasmGene Expression Regulation, NeoplasticHumansOncogene Proteins, FusionRecombinational DNA RepairSarcoma, EwingTumor Cells, CulturedDNA, NeoplasmOncogene Proteins, Fusionchromosomal translocationsCRISPR-Cas9desmoplastic small round cell tumour (DSRCT)Ewing sarcomagenomic editinghomology-directed repaironcogene

Identifiers

PMID28188619
PMCPMC5397343
OpenAlexW2586381100

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.