Evidence map›Paper›PMID 28188227›Full record

ArticleMolecular & cellular proteomics : MCP2017

The Human Leukocyte Antigen (HLA)-B27 Peptidome

Eilon Barnea, Dganit Melamed Kadosh, Yael Haimovich, Nimman Satumtira, Martha L Dorris, Mylinh T Nguyen, Robert E Hammer, Tri M Tran, Robert A Colbert, Joel D Taurog and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
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  5. Review
  6. Uncovering the Underworld of Axial Spondyloarthritis.International journal of molecular sciences · 2023
    Review
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  8. Observational
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  10. Review
  11. Article
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  13. Lessons on SpA pathogenesis from animal models.Seminars in immunopathology · 2021
    Review
  14. Article
  15. Review
  16. Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Eilon BarneaFrom the ‡Department of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.
Dganit Melamed KadoshFrom the ‡Department of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.
Yael HaimovichFrom the ‡Department of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.
Nimman Satumtira§Department of Internal Medicine, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-8884.
Martha L Dorris§Department of Internal Medicine, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-8884.
Mylinh T Nguyen¶Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-8816.
Robert E Hammer¶Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-8816.
Tri M Tran‖NIAMS, National Institutes of Health, Bethesda, Maryland 20892-1560.
Robert A Colbert‖NIAMS, National Institutes of Health, Bethesda, Maryland 20892-1560.
Joel D Taurog§Department of Internal Medicine, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-8884; admon@technion.ac.il joel.taurog@utsouthwestern.edu.
Arie AdmonFrom the ‡Department of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel; admon@technion.ac.il joel.taurog@utsouthwestern.edu.ORCID 0000-0003-0504-3950
Technion – Israel Institute of Technology · ILThe University of Texas Southwestern Medical Center · USNational Institutes of Health · USSouthwestern Medical Center · US

Funding

Clinical Support Services for the NIAMS Intramural Research ProgramZIDAR041180 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI COLBERT, ROBERT · 2009 to 2025
$119.2M
Pathogenic Mechanisms in SpondyloarthritisZIAAR041184 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI COLBERT, ROBERT · 2009 to 2025
$47.6M
6 · The paper itself

Abstract

HLA-B27 is a class I major histocompatibility (MHC-I) allele that confers susceptibility to the rheumatic disease ankylosing spondylitis (AS) by an unknown mechanism. ERAP1 is an aminopeptidase that trims peptides in the endoplasmic reticulum for binding to MHC-I molecules. ERAP1 shows genetic epistasis with HLA-B27 in conferring susceptibility to AS. Male HLA-B27 transgenic rats develop arthritis and serve as an animal model of AS, whereas female B27 transgenic rats remain healthy. We used large scale quantitative mass spectrometry to identify over 15,000 unique HLA-B27 peptide ligands, isolated after immunoaffinity purification of the B27 molecules from the spleens of HLA-B27 transgenic rats. Heterozygous deletion of Erap1, which reduced the Erap1 level to less than half, had no qualitative or quantitative effects on the B27 peptidome. Homozygous deletion of Erap1 affected approximately one-third of the B27 peptidome but left most of the B27 peptidome unchanged, suggesting the possibility that some of the HLA-B27 immunopeptidome is not processed in the presence of Erap1. Deletion of Erap1 was permissive for the AS-like phenotype, increased mean peptide length and increased the frequency of C-terminal hydrophobic residues and of N-terminal Ala, Ser, or Lys. The presence of Erap1 increased the frequency of C-terminal Lys and Arg, of Glu and Asp at intermediate residues, and of N-terminal Gly. Several peptides of potential interest in AS pathogenesis, previously identified in human cell lines, were isolated. However, rats susceptible to arthritis had B27 peptidomes similar to those of non-susceptible rats, and no peptides were found to be uniquely associated with arthritis. Whether specific B27-bound peptides are required for AS pathogenesis remains to be determined. Data are available via ProteomeXchange with identifier PXD005502.

Indexed as

Gene DeletionAminopeptidasesAnimalsDisease Models, AnimalFemaleGenetic Predisposition to DiseaseHLA-B27 AntigenHumansMaleMass SpectrometryPeptidesProtein Interaction MapsProteomicsRatsRats, TransgenicSpondylitis, AnkylosingAminopeptidasesErap1 protein, ratHLA-B27 AntigenPeptides

Identifiers

PMID28188227
PMCPMC5383784
OpenAlexW2586154810

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.