Evidence map›Paper›PMID 28187132›Full record

ArticlePLoS genetics2017

GWAS for serum galactose-deficient IgA1 implicates critical genes of the O-glycosylation pathway.

Krzysztof Kiryluk, Yifu Li, Zina Moldoveanu, Hitoshi Suzuki, Colin Reily, Ping Hou, Jingyuan Xie, Nikol Mladkova, Sindhuri Prakash, Clara Fischman and 16 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed, 1 pooled it
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 1 synthesis or guideline pooled it, 132 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Association of Complement Genetics with Outcomes in IgA Nephropathy.Clinical journal of the American Society of Nephrology : CJASN · 2026
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  12. Glycosylation in kidney diseases.Precision clinical medicine · 2025
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31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 9 institutions in 5 countries.

Krzysztof KirylukDept. of Medicine, Div. of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.
Yifu LiDept. of Medicine, Div. of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.ORCID 0000-0002-7077-7689
Zina MoldoveanuDept. of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Hitoshi SuzukiDivision of Nephrology, Dept. of Internal Medicine, Juntendo University Faculty of Medicine, Tokyo, Japan.
Colin ReilyDept. of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Ping HouRenal Div., Peking University First Hospital, Peking University Institute of Nephrology, Beijing, China.
Jingyuan XieDept. of Nephrology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Nikol MladkovaDept. of Medicine, Div. of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.
Sindhuri PrakashDept. of Medicine, Div. of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.
Clara FischmanDept. of Medicine, Div. of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.
Samantha ShapiroDept. of Medicine, Div. of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.
Robert A LeDesmaDept. of Medicine, Div. of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.ORCID 0000-0003-1435-4523
Drew BradburyDept. of Medicine, Div. of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.
Iuliana Ionita-LazaDept. of Biostatistics, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
Frank EitnerDept. of Nephrology, RWTH University of Aachen, Aachen, Germany.
Thomas RauenDept. of Nephrology, RWTH University of Aachen, Aachen, Germany.
Nicolas MaillardNephrology, Dialysis, and Renal Transplantation Dept., University North Hospital, Saint Etienne, France.
Francois BerthouxNephrology, Dialysis, and Renal Transplantation Dept., University North Hospital, Saint Etienne, France.ORCID 0000-0003-3816-8901
Jürgen FloegeDept. of Nephrology, RWTH University of Aachen, Aachen, Germany.
Nan ChenDept. of Nephrology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Hong ZhangRenal Div., Peking University First Hospital, Peking University Institute of Nephrology, Beijing, China.
Francesco ScolariDiv. of Nephrology, Azienda Ospedaliera Spedali Civili of Brescia, Montichiari Hospital, Univ of Brescia, Brescia, Italy.
Robert J WyattDiv. of Pediatric Nephrology, University of Tennessee Health Sciences Center, Memphis, Tennessee, United States of America.
Bruce A JulianDept. of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Ali G GharaviDept. of Medicine, Div. of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.
Jan NovakDept. of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Columbia University · USUniversity of Alabama at Birmingham · USPeking University · CNRWTH Aachen University · DEShanghai Jiao Tong University · CNAzienda Socio Sanitaria Territoriale degli Spedali Civili di Brescia · ITBayer (Germany) · DEJuntendo University · JPUniversity of Tennessee Health Science Center · US

Funding

Elucidating IgA Nephropathy through Genetic Studies of IgA1 GlycosylationR01DK082753 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GHARAVI, ALI G, NOVAK, JAN · 2009 to 2024
$8.7M
Molecular Basis of Pathogenicity of IgA1-containing Immune ComplexesR01DK078244 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI JAN NOVAK · 2007 to 2026
$6.0M
Genetics of IgA nephropathy by integrative network-based association studiesR01DK105124 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Krzysztof Kiryluk · 2015 to 2026
$4.8M
Novel Statistical methods for DNA Sequencing Data, and applications to Autism.R01MH095797 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IONITA, IULIANA · 2012 to 2022
$3.1M
Ancestry, Genetic Risk and Health Disparities in Immune-Mediated NephritisR01MD009223 · NIMHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BOMBACK, ANDREW STEPHEN, GHARAVI, ALI G · 2014 to 2018
$2.2M
Abnormal STAT3 Signaling and Aberrant O-Glycosylation of IgA1 in IgA NephropathyK01DK106341 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI REILY, COLIN ROBERT · 2015 to 2021
$918k
Quantitative Genetics of Defective IgA1 Glycosylation in IgA NephropathyK23DK090207 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KIRYLUK, KRZYSZTOF · 2011 to 2014
$729k
Population-based study of serum IgA, IgA1, and galactose-deficient IgA1 levelsR03DK099564 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KIRYLUK, KRZYSZTOF · 2013 to 2014
$160k
NIDDK NIH HHS K01 DK106341NIDDK NIH HHS K23 DK090207NIDDK NIH HHS R01 DK078244NIDDK NIH HHS R01 DK082753NIDDK NIH HHS R01 DK105124NIDDK NIH HHS R03 DK099564NIMHD NIH HHS R01 MD009223NIMH NIH HHS R01 MH095797
6 · The paper itself

Abstract

Aberrant O-glycosylation of serum immunoglobulin A1 (IgA1) represents a heritable pathogenic defect in IgA nephropathy, the most common form of glomerulonephritis worldwide, but specific genetic factors involved in its determination are not known. We performed a quantitative GWAS for serum levels of galactose-deficient IgA1 (Gd-IgA1) in 2,633 subjects of European and East Asian ancestry and discovered two genome-wide significant loci, in C1GALT1 (rs13226913, P = 3.2 x 10-11) and C1GALT1C1 (rs5910940, P = 2.7 x 10-8). These genes encode molecular partners essential for enzymatic O-glycosylation of IgA1. We demonstrated that these two loci explain approximately 7% of variability in circulating Gd-IgA1 in Europeans, but only 2% in East Asians. Notably, the Gd-IgA1-increasing allele of rs13226913 is common in Europeans, but rare in East Asians. Moreover, rs13226913 represents a strong cis-eQTL for C1GALT1 that encodes the key enzyme responsible for the transfer of galactose to O-linked glycans on IgA1. By in vitro siRNA knock-down studies, we confirmed that mRNA levels of both C1GALT1 and C1GALT1C1 determine the rate of secretion of Gd-IgA1 in IgA1-producing cells. Our findings provide novel insights into the genetic regulation of O-glycosylation and are relevant not only to IgA nephropathy, but also to other complex traits associated with O-glycosylation defects, including inflammatory bowel disease, hematologic disease, and cancer.

Indexed as

Polymorphism, Single NucleotideAllelesAsian PeopleCell LineCohort StudiesGalactoseGalactosyltransferasesGene Expression RegulationGene FrequencyGene Regulatory NetworksGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeGlomerulonephritis, IGAGlycosylationHumansC1GALT1C1 protein, humanC1GALT1 protein, humanGalactoseGalactosyltransferasesHECW1 protein, humanImmunoglobulin AMolecular ChaperonesNerve Tissue ProteinsUbiquitin-Protein Ligases

Identifiers

PMID28187132
PMCPMC5328405
OpenAlexW2951260600

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.