Evidence map›Paper›PMID 28186406›Full record

ArticleACS chemical biology2017

Substrate Trapping in the Siderophore Tailoring Enzyme PvdQ.

Kenneth D Clevenger, Romila Mascarenhas, Daniel Catlin, Rui Wu, Neil L Kelleher, Eric J Drake, Andrew M Gulick, Dali Liu, Walter Fast

Abstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. The biosynthesis of pyoverdines.Microbial cell (Graz, Austria) · 2018
    Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kenneth D ClevengerDepartment of Chemistry, Northwestern University , Evanston, Illinois 60208, United States.
Romila MascarenhasDepartment of Chemistry and Biochemistry, Loyola University Chicago , Chicago, Illinois 60660, United States.
Daniel CatlinDepartment of Chemistry and Biochemistry, Loyola University Chicago , Chicago, Illinois 60660, United States.
Rui WuDepartment of Chemistry and Biochemistry, Loyola University Chicago , Chicago, Illinois 60660, United States.
Neil L KelleherDepartment of Chemistry, Northwestern University , Evanston, Illinois 60208, United States.ORCID 0000-0002-8815-3372
Eric J DrakeHauptman-Woodward Medical Research Institute and Department of Structural Biology, SUNY University at Buffalo , Buffalo, New York 14203, United States.
Andrew M GulickHauptman-Woodward Medical Research Institute and Department of Structural Biology, SUNY University at Buffalo , Buffalo, New York 14203, United States.
Dali LiuDepartment of Chemistry and Biochemistry, Loyola University Chicago , Chicago, Illinois 60660, United States.

Funding

Mass Spectrometric Studies of Thiotemplate BiosynthesisR01AT009143 · NCCIH · NORTHWESTERN UNIVERSITY · PI NEIL L KELLEHER, NANCY P KELLER · 2016 to 2026
$4.2M
NCCIH NIH HHS R01 AT009143
6 · The paper itself

Abstract

Siderophore biosynthesis by Pseudomonas aeruginosa enhances virulence and represents an attractive drug target. PvdQ functions in the type-1 pyoverdine biosynthetic pathway by removing a myristoyl anchor from a pyoverdine precursor, allowing eventual release from the periplasm. A circularly permuted version of PvdQ bypasses the self-processing step of this Ntn-hydrolase and retains the activity, selectivity, and structure of wild-type PvdQ, as revealed by a 1.8 Å resolution X-ray crystal structure. A 2.55 Å resolution structure of the inactive S1A/N269D-cpPvdQ mutant in complex with the pyoverdine precursor PVDIq reveals a specific binding pocket for the d-Tyr of this modified peptide substrate. To our knowledge, this structure is the first of a pyoverdine precursor peptide bound to a biosynthetic enzyme. Details of the observed binding interactions have implications for control of pyoverdine biosynthesis and inform future drug design efforts.

Indexed as

AmidohydrolasesCrystallography, X-RayProtein ConformationPseudomonas aeruginosaSiderophoresSubstrate SpecificityAmidohydrolasesN-terminal nucleophile hydrolaseSiderophores

Identifiers

PMID28186406
PMCPMC5373092

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.