Evidence map›Paper›PMID 28186197›Full record

ArticleScientific reports2017

New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp. MP131-18.

Constanze Paulus, Yuriy Rebets, Bogdan Tokovenko, Suvd Nadmid, Larisa P Terekhova, Maksym Myronovskyi, Sergey B Zotchev, Christian Rückert, Simone Braig, Stefan Zahler and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. MarineMarine drugs · 2024
    Review
  11. Pan-Omics in Sheep: Unveiling Genetic Landscapes.Animals : an open access journal from MDPI · 2024
    Review
  12. Review
  13. Marine-DerivedMicroorganisms · 2023
    Article
  14. Article
  15. Metabologenomics analysis ofFrontiers in microbiology · 2023
    Article
  16. Article
  17. Review
  18. Review
  19. Marine Pyrrole Alkaloids.Marine drugs · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Constanze PaulusHelmholtz-Institute for Pharmaceutical Research Saarland, Actinobacteria Metabolic Engineering Group, Saarbrücken, Germany.
Yuriy RebetsHelmholtz-Institute for Pharmaceutical Research Saarland, Actinobacteria Metabolic Engineering Group, Saarbrücken, Germany.
Bogdan TokovenkoHelmholtz-Institute for Pharmaceutical Research Saarland, Actinobacteria Metabolic Engineering Group, Saarbrücken, Germany.
Suvd NadmidHelmholtz-Institute for Pharmaceutical Research Saarland, Actinobacteria Metabolic Engineering Group, Saarbrücken, Germany.
Larisa P TerekhovaGause Institute of New Antibiotics, Russian Academy of Medical Sciences, Moscow, Russia.
Maksym MyronovskyiHelmholtz-Institute for Pharmaceutical Research Saarland, Actinobacteria Metabolic Engineering Group, Saarbrücken, Germany.
Sergey B ZotchevDepartment of Biotechnology, Norwegian University of Science and Technology, Trondheim, Norway.
Christian RückertCenter for Biotechnology, Bielefeld University, Bielefeld, Germany.
Simone BraigDepartment of Pharmacy - Center for Drug Research, University of Munich, Munich, Germany.
Stefan ZahlerDepartment of Pharmacy - Center for Drug Research, University of Munich, Munich, Germany.
Jörn KalinowskiCenter for Biotechnology, Bielefeld University, Bielefeld, Germany.
Andriy LuzhetskyyHelmholtz-Institute for Pharmaceutical Research Saarland, Actinobacteria Metabolic Engineering Group, Saarbrücken, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine actinobacteria are drawing more and more attention as a promising source of new natural products. Here we report isolation, genome sequencing and metabolic profiling of new strain Streptomyces sp. MP131-18 isolated from marine sediment sample collected in the Trondheim Fjord, Norway. The 16S rRNA and multilocus phylogenetic analysis showed that MP131-18 belongs to the genus Streptomyces. The genome of MP131-18 isolate was sequenced, and 36 gene clusters involved in the biosynthesis of 18 different types of secondary metabolites were predicted using antiSMASH analysis. The combined genomics-metabolics profiling of the strain led to the identification of several new biologically active compounds. As a result, the family of bisindole pyrroles spiroindimicins was extended with two new members, spiroindimicins E and F. Furthermore, prediction of the biosynthetic pathway for unusual α-pyrone lagunapyrone isolated from MP131-18 resulted in foresight and identification of two new compounds of this family - lagunapyrones D and E. The diversity of identified and predicted compounds from Streptomyces sp. MP131-18 demonstrates that marine-derived actinomycetes are not only a promising source of new natural products, but also represent a valuable pool of genes for combinatorial biosynthesis of secondary metabolites.

Indexed as

GenomicsMetabolomicsAnti-Bacterial AgentsAquatic OrganismsBiological ProductsBiosynthetic PathwaysGenome, BacterialIndolesMolecular Sequence AnnotationMultigene FamilyPhylogenyPyrrolesSecondary MetabolismStreptomycesAnti-Bacterial AgentsBiological ProductsindoleIndolesPyrroles

Identifiers

PMID28186197
PMCPMC5301196

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.