ArticleNeuroinformatics2017
Ensemble Neuron Tracer for 3D Neuron Reconstruction.
Article in Neuroinformatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.
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Who cites it
16 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain.Scientific reports · 2023Pooled it
- Quantifying morphologies of developing neuronal cells using deep learning with imperfect annotations.IBRO neuroscience reports · 2024Article
- Complete Neuron Reconstruction Based on Branch Confidence.Brain sciences · 2024Article
- BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.Nature methods · 2023Article
- SNAP: a structure-based neuron morphology reconstruction automatic pruning pipeline.Frontiers in neuroinformatics · 2023Article
- Tracing weak neuron fibers.Bioinformatics (Oxford, England) · 2023Article
- Neuron tracing from light microscopy images: automation, deep learning and bench testing.Bioinformatics (Oxford, England) · 2022Review
- Hidden Markov modeling for maximum probability neuron reconstruction.Communications biology · 2022Article
- Exploring highly reliable substructures in auto-reconstructions of a neuron.Brain informatics · 2021Article
- Article
- Retrieving similar substructures on 3D neuron reconstructions.Brain informatics · 2020Article
- A Smart Region-Growing Algorithm for Single-Neuron Segmentation From Confocal and 2-Photon Datasets.Frontiers in neuroinformatics · 2020Article
- Neuronize v2: Bridging the Gap Between Existing Proprietary Tools to Optimize Neuroscientific Workflows.Frontiers in neuroanatomy · 2020Article
- Segmentation, Tracing, and Quantification of Microglial Cells from 3D Image Stacks.Scientific reports · 2019Article
- FMST: an Automatic Neuron Tracing Method Based on Fast Marching and Minimum Spanning Tree.Neuroinformatics · 2019Article
- Gotta Trace 'em All: A Mini-Review on Tools and Procedures for Segmenting Single Neurons Toward Deciphering the Structural Connectome.Frontiers in bioengineering and biotechnology · 2019Review
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Tracing of neuron paths is important in neuroscience. Recent studies have shown that it is possible to segment and reconstruct three-dimensional morphology of axons and dendrites using fully automatic neuron tracing methods. A specific tracer may be better than others for a specific dataset, but another tracer could perform better for some other datasets. Ensemble of learners is an effective way to improve learning accuracy in machine learning. We developed automatic ensemble neuron tracers, which consistently perform well on 57 datasets of 5 species collected from 7 laboratories worldwide. Quantitative evaluation based on the data generated by human annotators shows that the proposed ensemble tracers are valuable for 3D neuron tracing and can be widely applied to different datasets.
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